Difference between revisions of "2014 Project Week:TCIA Browser Extension in Slicer"
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Image:PW-SLC2014.png|[[2014_Winter_Project_Week#Projects|Projects List]] | Image:PW-SLC2014.png|[[2014_Winter_Project_Week#Projects|Projects List]] | ||
| + | Image:Tcia1.png|Layout: Patients, Studies, Series | ||
| + | Image:Tcia2.png|Collections | ||
| + | Image:Tcia3.png|Series View | ||
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</gallery> | </gallery> | ||
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* BWH: Alireza Mehrtash, Andrey Fedorov, Ron Kikinis | * BWH: Alireza Mehrtash, Andrey Fedorov, Ron Kikinis | ||
* Isomics: Steve Pieper | * Isomics: Steve Pieper | ||
| + | * NCI Imaging Program: Justin Kirby, John Freymann | ||
| + | |||
==Project Description== | ==Project Description== | ||
| − | The Cancer Imaging Archive (TCIA) hosts a large collection of Cancer medical imaging data which is available to public. The goal of this project is to develop a Slicer module in order to retrieve the medical images hosted at TCIA and visualize them in 3D Slicer. | + | The Cancer Imaging Archive (TCIA) hosts a large collection of Cancer medical imaging data which is available to public [1]. The goal of this project is to develop a Slicer module in order to retrieve the medical images hosted at TCIA and visualize them in 3D Slicer. |
<div style="margin: 20px;"> | <div style="margin: 20px;"> | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
<h3>Objective</h3> | <h3>Objective</h3> | ||
| − | * | + | * Create a scripted Slicer module for browsing TCIA collections and loading images into Slicer scene. |
| − | |||
</div> | </div> | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
<h3>Approach, Plan</h3> | <h3>Approach, Plan</h3> | ||
| + | * Study the latest changes in TCIA API [3] and update the current module prototype. | ||
* Discuss about the module functionality and UI design. | * Discuss about the module functionality and UI design. | ||
* Review the desired interactions of module with Slicer DICOM database. | * Review the desired interactions of module with Slicer DICOM database. | ||
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<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
<h3>Progress</h3> | <h3>Progress</h3> | ||
| − | * | + | * We developed a scripted module for Slicer which can be used to connect to TCIA archive, browse the data, download and load into Slicer scene. |
| + | * The module is finalized and is ready to be published as a Slicer extension. | ||
</div> | </div> | ||
</div> | </div> | ||
| − | |||
| − | |||
==References== | ==References== | ||
| − | * TCIA Home Page : http://cancerimagingarchive.net/ | + | *[1] Module Code at Github: https://github.com/mehrtash/TCIABrowser/tree/master/TCIABrowser |
| − | * Slicer TCIA interface project | + | *[2] TCIA Home Page : http://cancerimagingarchive.net/ |
| + | *[3] QIICR wiki: Slicer TCIA interface project : https://github.com/QIICR/ProjectIssuesAndWiki/wiki/Slicer-tcia-interface | ||
| + | *[4] TCIA Rest API Documentation: https://wiki.cancerimagingarchive.net/display/Public/TCIA+Programmatic+Interface+%28REST+API%29+Usage+Guide | ||
| + | *[5] Module UI Design: https://docs.google.com/presentation/d/1HJcbNxhAGXP9Raw0JZFPzKXqgOgR8sv7eikYIsWPKNQ/edit?usp=sharing | ||
Latest revision as of 17:08, 10 January 2014
Home < 2014 Project Week:TCIA Browser Extension in Slicer
Layout: Patients, Studies, Series
Collections
Series View
Key Investigators
- BWH: Alireza Mehrtash, Andrey Fedorov, Ron Kikinis
- Isomics: Steve Pieper
- NCI Imaging Program: Justin Kirby, John Freymann
Project Description
The Cancer Imaging Archive (TCIA) hosts a large collection of Cancer medical imaging data which is available to public [1]. The goal of this project is to develop a Slicer module in order to retrieve the medical images hosted at TCIA and visualize them in 3D Slicer.
Objective
- Create a scripted Slicer module for browsing TCIA collections and loading images into Slicer scene.
Approach, Plan
- Study the latest changes in TCIA API [3] and update the current module prototype.
- Discuss about the module functionality and UI design.
- Review the desired interactions of module with Slicer DICOM database.
- Review the different methods for displaying and organizing query results.
Progress
- We developed a scripted module for Slicer which can be used to connect to TCIA archive, browse the data, download and load into Slicer scene.
- The module is finalized and is ready to be published as a Slicer extension.
References
- [1] Module Code at Github: https://github.com/mehrtash/TCIABrowser/tree/master/TCIABrowser
- [2] TCIA Home Page : http://cancerimagingarchive.net/
- [3] QIICR wiki: Slicer TCIA interface project : https://github.com/QIICR/ProjectIssuesAndWiki/wiki/Slicer-tcia-interface
- [4] TCIA Rest API Documentation: https://wiki.cancerimagingarchive.net/display/Public/TCIA+Programmatic+Interface+%28REST+API%29+Usage+Guide
- [5] Module UI Design: https://docs.google.com/presentation/d/1HJcbNxhAGXP9Raw0JZFPzKXqgOgR8sv7eikYIsWPKNQ/edit?usp=sharing
