Difference between revisions of "2014 How about the Future"

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  [[AHM_2014#Agenda|Back to AHM_2014 Agenda]]
 
  [[AHM_2014#Agenda|Back to AHM_2014 Agenda]]
  
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[[image:Slicer-country-stats-2013-11-16.png|right|thumb|500px|Slicer downloads by country and region]]
+
{| border="00" cellpadding="5" cellspacing="0" width="90%"
 +
|-
 +
| align="left"|
 +
=The Scoop=
 +
<big><big>
 +
*Project week will continue.
 +
*3D Slicer 4  will continue.
 +
</big></big>
 
=Introduction=
 
=Introduction=
 
This page contains talking points for the opening session of the NA-MIC AHM 2014 (the last one).
 
This page contains talking points for the opening session of the NA-MIC AHM 2014 (the last one).
 +
 +
| style="background: #ebeced" align="center"| [[Image:Slicer-country-stats-2013-11-16.png|500px|Slicer downloads by country and region]]
 +
Slicer downloads by country and region
 +
|-
 +
|}
 +
  
 
=What we have accomplished=
 
=What we have accomplished=
−
*Created an outstanding scientific and engineering community in the field of [http://en.wikipedia.org/wiki/Medical_image_computing Medical Image Computing] (MIC).
+
*Created a vibrant scientific and engineering community in the field of [http://en.wikipedia.org/wiki/Medical_image_computing Medical Image Computing] (MIC).
−
*Investigated novel algorithmic approaches: Particle systems, registration algorithms, segmentation algorithms,
+
*Investigated novel algorithmic approaches: Particle systems, registration algorithms, segmentation algorithms, software engineering methodologies
−
*Created the NA-MIC kit, a free open source platform for MIC.
+
*Created the NA-MIC kit, a free open source platform for MIC and the basis for 3D Slicer.
−
*Turned 3D Slicer into a platform with worldwide impact.
+
*3D Slicer is today a platform with worldwide impact.
−
 
 
−
=Where we are today=
 
−
*Many algorithm papers, prototypes, and tools
 
−
*Slicer 4 is a high performance FOSS and will be available for several years
 
  
 
=Highlights=
 
=Highlights=
 
* Robust algorithms for segmentation in the face of anatomical variability: label fusion
 
* Robust algorithms for segmentation in the face of anatomical variability: label fusion
 +
* Comprehensive toolbox for the analysis of individual and population DTI data
 +
* The predominant shape analysis toolbox in the field/used in clinical papers(SPHARM-PDM)
 
* A novel framework for modeling brain connectivity networks
 
* A novel framework for modeling brain connectivity networks
 
* Robust pipeline for processing clinical brain images
 
* Robust pipeline for processing clinical brain images
 +
* Automatic 4D segmentation of longitudinal brain MRI in severe TBI
 +
* Tract-oriented white matter analysis for subject-specific and population analysis
 +
* NAMIC researchers take lead in novel spatio-temporal image and shape analysis methodologies (Whitaker, Styner, Gerig, Tannenbaum and colleagues)
  
 
=Where we go from here=
 
=Where we go from here=
−
*Funding:
+
*Project week will continue to provide a venue for hands on multi-partner collaboration in a rich MIC software environment.
−
**NIH mandated sunset for NA-MIC in June 2014.  
+
*3D Slicer 4 will continue to provide a stable platform as a target for plug-in development and distribution.
−
**[http://projectreporter.nih.gov/project_info_description.cfm?aid=8415024&icde=18711051&ddparam=&ddvalue=&ddsub=&cr=8&csb=default&cs=ASC NAC] funded through 2018.  
+
*The remaining months of NA-MIC funding will be used to
−
**[http://projectreporter.nih.gov/project_info_description.cfm?aid=8606944&icde=18711051&ddparam=&ddvalue=&ddsub=&cr=1&csb=default&cs=ASC QIICR] funded through 2018.
+
**Improve the stability of Slicer and simplify the submission of extensions.
 +
**Create a new batch of extensions
 +
**Improve documentation and create tutorials
 +
 
 +
=Grants=
 +
*Grants that will allow continued participation in the community after the NIH mandated sunset for NA-MIC in June 2014.  
 +
**[http://projectreporter.nih.gov/project_info_description.cfm?aid=8415024&icde=18711051&ddparam=&ddvalue=&ddsub=&cr=8&csb=default&cs=ASC NAC] funded through 2018. Ron Kikinis
 +
**[http://projectreporter.nih.gov/project_info_description.cfm?aid=8606944&icde=18711051&ddparam=&ddvalue=&ddsub=&cr=1&csb=default&cs=ASC QIICR] funded through 2018. Ron Kikinis, Andrey Fedorov
 +
** "An Open Source Software for Proton Treatment Planning," NCI/Federal Share Grant C06-CA059267 funded through Dec 2014, Greg Sharp
 +
**[http://projectreporter.nih.gov/project_info_description.cfm?aid=8551816&icde=18802965&ddparam=&ddvalue=&ddsub=&cr=1&csb=default&cs=ASC 4DShape]"4D Shape Analysis for Modeling Spatiotemporal Change Trajectories in Huntington's" (NINDS, 07/01/12- 06/30/15) PIs Gerig/Fletcher Utah, co-investigators Johnson/Paulsen Iowa
 +
** [http://projectreporter.nih.gov/project_info_description.cfm?aid=8576556&icde=18804072 NA-MIC Collaboration R01] (NIDCR) on "Quantification of 3D Bony Changes in Temporomandibular joint osteoarthritis", PI Cevidanes/U Michigan, co-investigators Martin Styner/Beatriz Paniagua/UNC, Steve Piper
 
**Several other grants are being worked on
 
**Several other grants are being worked on
−
*** U54 for further development of statsitical methods, computational platform and visualization tools
+
=Software=
−
*** R01 jointly with MGH Stroke Center to develop and maintain a pipeline for multimodal stroke image analysis across sites
+
*3D Slicer
−
*Project weeks will continue, as long as there is continued interest by the community.
+
*Other packages and Slicer extensions
−
*Slicer 4 will be maintained as a stable platform.
+
** "MABS," an end-user software for multi-atlas segmentation, Greg Sharp
−
*The remaining months of NA-MIC funding will be used to simplify the submission of extensions.
+
** "SPHARM-PDM", an end-user software for shape analysis, also including group-wise based particle correspondence, Martin Styner
 +
** "DTIPrep", Comprehensive DWI/DTI QC tool, Martin Styner
 +
** "DTIAtlasBuilder", DTI co-registration and atlas building software, Martin Styner
 +
** "DTIAtlasFiberAnalyzer", DTI fiber profile statistics generation, Martin Styner
 +
** "FiberViewerLight", DTI fiber processing & clustering software, Martin Styner
 +
** "CARMA Cardiac MR Tookit", Cardiac MRI segmentation and quantification software, CARMA Center
 +
** "ABC: Atlas-based Classification", Automatic brain MRI processing pipeline, Prastawa/Gerig
 +
** "SlicerRT", adaptive radiation therapy data analysis, comparison, and visualization tools, Gabor Fichtinger
 +
** "SlicerIGT", image-guided therapy planning and guidance tools, Nobuhiko Hata, Gabor Fichtinger
 +
** "PerkTutor", training and skill assessment software for needle-based percutaneous interventions, Gabor Fichtinger
 +
** "MatlabBridge", tool for making available software developed in Matlab environment inside 3D Slicer, Gabor Fichtinger
 +
** "TransformVisualizer", software for quick visual assessment of registration results, Gabor Fichtinger

Latest revision as of 13:50, 9 January 2014

Home < 2014 How about the Future
Back to AHM_2014 Agenda

The Scoop

  • Project week will continue.
  • 3D Slicer 4 will continue.

Introduction

This page contains talking points for the opening session of the NA-MIC AHM 2014 (the last one).

Slicer downloads by country and region

Slicer downloads by country and region


What we have accomplished

  • Created a vibrant scientific and engineering community in the field of Medical Image Computing (MIC).
  • Investigated novel algorithmic approaches: Particle systems, registration algorithms, segmentation algorithms, software engineering methodologies
  • Created the NA-MIC kit, a free open source platform for MIC and the basis for 3D Slicer.
  • 3D Slicer is today a platform with worldwide impact.

Highlights

  • Robust algorithms for segmentation in the face of anatomical variability: label fusion
  • Comprehensive toolbox for the analysis of individual and population DTI data
  • The predominant shape analysis toolbox in the field/used in clinical papers(SPHARM-PDM)
  • A novel framework for modeling brain connectivity networks
  • Robust pipeline for processing clinical brain images
  • Automatic 4D segmentation of longitudinal brain MRI in severe TBI
  • Tract-oriented white matter analysis for subject-specific and population analysis
  • NAMIC researchers take lead in novel spatio-temporal image and shape analysis methodologies (Whitaker, Styner, Gerig, Tannenbaum and colleagues)

Where we go from here

  • Project week will continue to provide a venue for hands on multi-partner collaboration in a rich MIC software environment.
  • 3D Slicer 4 will continue to provide a stable platform as a target for plug-in development and distribution.
  • The remaining months of NA-MIC funding will be used to
    • Improve the stability of Slicer and simplify the submission of extensions.
    • Create a new batch of extensions
    • Improve documentation and create tutorials

Grants

  • Grants that will allow continued participation in the community after the NIH mandated sunset for NA-MIC in June 2014.
    • NAC funded through 2018. Ron Kikinis
    • QIICR funded through 2018. Ron Kikinis, Andrey Fedorov
    • "An Open Source Software for Proton Treatment Planning," NCI/Federal Share Grant C06-CA059267 funded through Dec 2014, Greg Sharp
    • 4DShape"4D Shape Analysis for Modeling Spatiotemporal Change Trajectories in Huntington's" (NINDS, 07/01/12- 06/30/15) PIs Gerig/Fletcher Utah, co-investigators Johnson/Paulsen Iowa
    • NA-MIC Collaboration R01 (NIDCR) on "Quantification of 3D Bony Changes in Temporomandibular joint osteoarthritis", PI Cevidanes/U Michigan, co-investigators Martin Styner/Beatriz Paniagua/UNC, Steve Piper
    • Several other grants are being worked on

Software

  • 3D Slicer
  • Other packages and Slicer extensions
    • "MABS," an end-user software for multi-atlas segmentation, Greg Sharp
    • "SPHARM-PDM", an end-user software for shape analysis, also including group-wise based particle correspondence, Martin Styner
    • "DTIPrep", Comprehensive DWI/DTI QC tool, Martin Styner
    • "DTIAtlasBuilder", DTI co-registration and atlas building software, Martin Styner
    • "DTIAtlasFiberAnalyzer", DTI fiber profile statistics generation, Martin Styner
    • "FiberViewerLight", DTI fiber processing & clustering software, Martin Styner
    • "CARMA Cardiac MR Tookit", Cardiac MRI segmentation and quantification software, CARMA Center
    • "ABC: Atlas-based Classification", Automatic brain MRI processing pipeline, Prastawa/Gerig
    • "SlicerRT", adaptive radiation therapy data analysis, comparison, and visualization tools, Gabor Fichtinger
    • "SlicerIGT", image-guided therapy planning and guidance tools, Nobuhiko Hata, Gabor Fichtinger
    • "PerkTutor", training and skill assessment software for needle-based percutaneous interventions, Gabor Fichtinger
    • "MatlabBridge", tool for making available software developed in Matlab environment inside 3D Slicer, Gabor Fichtinger
    • "TransformVisualizer", software for quick visual assessment of registration results, Gabor Fichtinger
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