Difference between revisions of "2014 Summer Project Week:Pipeline Visualization"
From NAMIC Wiki
| (4 intermediate revisions by 2 users not shown) | |||
| Line 3: | Line 3: | ||
Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]] | Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]] | ||
Image:Pipeline_visualization_sketch.png| Visualization of pipeline from code | Image:Pipeline_visualization_sketch.png| Visualization of pipeline from code | ||
| + | Image:atlas_pipeline.png|BRAINSTools Template pipeline | ||
</gallery> | </gallery> | ||
| Line 10: | Line 11: | ||
==Project Description== | ==Project Description== | ||
| + | We have developed an extension to nipype (http://nipy.sourceforge.net/nipype/) that allows for visualization of pipelines and their results. | ||
| + | At the project week, we plan to improve the visualization and features and release our code. | ||
| + | |||
| + | Live demo (temporary link): http://shoutkey.com/grant | ||
<div style="margin: 20px;"> | <div style="margin: 20px;"> | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
<h3>Objective</h3> | <h3>Objective</h3> | ||
| − | We | + | We plan to show our demo and get feedback to improve the visualization. |
| − | |||
</div> | </div> | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
| Line 24: | Line 28: | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
<h3>Progress</h3> | <h3>Progress</h3> | ||
| + | * Code on github: https://github.com/rameshvs/nipype/tree/visualization-serverhttps://github.com/rameshvs/nipype/tree/visualization-server | ||
| + | * Worked with Dave to visualize Iowa BRAINS pipeline (see screenshot) | ||
</div> | </div> | ||
</div> | </div> | ||
Latest revision as of 13:53, 27 June 2014
Home < 2014 Summer Project Week:Pipeline Visualization
Visualization of pipeline from code
BRAINSTools Template pipeline
Key Investigators
- Ramesh Sridharan, Adrian Dalca, Polina Golland, MIT
Project Description
We have developed an extension to nipype (http://nipy.sourceforge.net/nipype/) that allows for visualization of pipelines and their results. At the project week, we plan to improve the visualization and features and release our code.
Live demo (temporary link): http://shoutkey.com/grant
Objective
We plan to show our demo and get feedback to improve the visualization.
Approach, Plan
- Release code / integrate with nipype codebase
- Discuss wishlist for visualization (come see me if you have any thoughts!)
Progress
- Code on github: https://github.com/rameshvs/nipype/tree/visualization-serverhttps://github.com/rameshvs/nipype/tree/visualization-server
- Worked with Dave to visualize Iowa BRAINS pipeline (see screenshot)
