Difference between revisions of "CMF Workshop Cleveland 2014"
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*1:00 – 2:00pm | *1:00 – 2:00pm | ||
| − | - General presentation of the different '''open source dental tools''' | + | - General presentation of the different '''open source dental tools''' [[File:ClevelandPresentation.pdf]] – ''Lucia Cevidanes'' |
- Presentation '''EasyClip''' – ''Julia Lopinto'' | - Presentation '''EasyClip''' – ''Julia Lopinto'' | ||
| Line 39: | Line 39: | ||
*2:00 – 3:00pm | *2:00 – 3:00pm | ||
| − | Dicom files - They are different from the gipl files – ''Lucia Cevidanes'' | + | - Dicom files - They are different from the gipl files – ''Lucia Cevidanes'' |
---- | ---- | ||
*3:00 – 3:30pm | *3:00 – 3:30pm | ||
| − | Gipl files – ''Antonio Ruella'' | + | - Gipl files – ''Antonio Ruella'' |
---- | ---- | ||
*3:30 – 4:00pm | *3:30 – 4:00pm | ||
| − | Scan already approximated – ''Antonio Ruella'' | + | - Scan already approximated – ''Antonio Ruella'' |
---- | ---- | ||
*4:00 – 4:30pm | *4:00 – 4:30pm | ||
| − | CB segmentation – ''Antonio Ruella'' | + | - CB segmentation – ''Antonio Ruella'' |
---- | ---- | ||
*4:30 – 5:00pm | *4:30 – 5:00pm | ||
| − | CB registration – ''Antonio Ruella'' | + | - CB registration – ''Antonio Ruella'' |
==Presenters== | ==Presenters== | ||
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==Software== | ==Software== | ||
| − | [ | + | [https://na-mic.org/w/images/e/e8/Data_ITKsnap.zip ITKsnap segmentation] |
| − | [ | + | [https://na-mic.org/w/images/4/47/Data_Slicer3.zip Slicer4 visualization] |
==Data== | ==Data== | ||
| − | Folder 1: Dicom files - They are different from the gipl files | + | [https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEV0M4eWJEeUhrb3c&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 1: Dicom files - They are different from the gipl files] |
| − | Folder 2: gipl files | + | [https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEQWJzN29BMnR2WW8&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 2: gipl files] |
| − | Folder 3: Scan already approximated | + | [https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEYWE4QWRXUk5JNjg&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 3: Scan already approximated] |
| − | Folder 4: CB segmentation | + | [https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEOEVFWmVRUVpRQWM&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 4: CB segmentation] |
| − | Folder 5: CB registration | + | [https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPESi1pQzVkQWFFckk&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 5: CB registration] |
| − | Folder 5a: segm Max and MD T1 | + | [https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPESUNRVERaY0JnXzQ&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 5a: segm Max and MD T1] |
| − | Folder 6: Models - CB registration | + | [https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEWEp3ZWhkYTU4MVk&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 6: Models - CB registration] |
[https://www.youtube.com/channel/UCQUtGe5KrpBt2k4mrNeHeUQ/videos DCBIA Videos - Tutorial videos for the image analysis tools] | [https://www.youtube.com/channel/UCQUtGe5KrpBt2k4mrNeHeUQ/videos DCBIA Videos - Tutorial videos for the image analysis tools] | ||
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==Other Resources== | ==Other Resources== | ||
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[http://www.ncbi.nlm.nih.gov/pubmed?term=spharm%20pdm%20styner SPHARM-PDM publications in PubMed] | [http://www.ncbi.nlm.nih.gov/pubmed?term=spharm%20pdm%20styner SPHARM-PDM publications in PubMed] | ||
| − | [ | + | [https://www.slicer.org/wiki/Main_Page Slicer user orientation] |
| − | [ | + | [https://www.slicer.org/wiki/Documentation/4.3/Training Slicer tutorials] |
==Participant List== | ==Participant List== | ||
Latest revision as of 18:27, 10 July 2017
Home < CMF Workshop Cleveland 2014
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Contents
Pre- Joint Cephalometric Experts Imaging Hands-on Workshop
Introduction
This workshop will highlight new developments in publicly available software for image analysis and imaging based research for Dental applications. 3D image analysis continue to mandate a multidisciplinary collaborative team including clinician researchers, software engineers and computer science experts. This hands-on workshop for Cranio Maxillo Facial applications will be held prior to the Joint Cephalometric Experts Group at the Bolton Brush Growth Study Center, Cleveland, OH. This work was supported by the National Institute Of Dental & Craniofacial Research of the National Institutes of Health under Award Number R01DE024450. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health
Date and Location
Wednesday November 5th , 1:00-‐5:00 pm, at the Case Western Reserve University School of Dental Medicine.
Workshop Content
- 1:00 – 2:00pm
- General presentation of the different open source dental tools File:ClevelandPresentation.pdf – Lucia Cevidanes
- Presentation EasyClip – Julia Lopinto
- Presentation Angle Measurement – Julia Lopinto
- Presentation Pick'nPaint – Lucie Macron
- Installation of software: ITK-SNAP (version 2.4) and Slicer-4.3.1
Problems for the installation of Slicer because a new version was just upload on the website and with this version the extension presented during the workshop can’t be installed.
The different presentations started with a presentation and a demonstration of the use of the tool The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers.
- 2:00 – 3:00pm
- Dicom files - They are different from the gipl files – Lucia Cevidanes
- 3:00 – 3:30pm
- Gipl files – Antonio Ruella
- 3:30 – 4:00pm
- Scan already approximated – Antonio Ruella
- 4:00 – 4:30pm
- CB segmentation – Antonio Ruella
- 4:30 – 5:00pm
- CB registration – Antonio Ruella
Presenters
- Lucia Cevidanes , Ph.D, DDS, University of Michigan
luciacev@umich.edu
- Antonio Ruella, Ph.D, DDS, MS, University of Michigan
antonioruellas@yahoo.com.br
- Marcelo Gomes, DDS, MS, University of Michigan
marceloregisgomes@hotmail.com
- Liliane Gomes, DDS, MS, PhD student, University of Michigan
lilianerosas@hotmail.com
- Marilia Yatabe, DDS, MS, PhD student, University of Michigan
msyatabe@umich.edu
- Lucie Macron, Computer Programmer intern, University of Michigan
luciemac@umich.edu
- Julia Lopinto, Computer Programmer intern, University of Michigan
jlop@umich.edu
Preparation for the workshop
The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers. All participants are required to come with their own laptop computer and install the software and datasets prior to the event. A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory is required. Shared memory graphics boards have significantly poorer performance.
Software
Data
Folder 1: Dicom files - They are different from the gipl files
Folder 3: Scan already approximated
Folder 6: Models - CB registration
DCBIA Videos - Tutorial videos for the image analysis tools
Other Resources
Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC)
SPHARM-PDM publications in PubMed
Participant List
- Toni Magni
- Vicente Hernandez-Soler
- Anwar Alhazmi
- Bo Amornporncharoen
- Michael Mouroulanos
- Ipsit Patra
- Pritesh Parmar
- Domenico Dalessandri
- Alex Vo
- Manuel Lagravere
- Nicholas Dietrich
- Ahmed Ghoneima
- Mohamed Bazina
