Difference between revisions of "Shiga 2015 Workshop"

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==Image-Guided Therapy Research using Open Source Free Software 3D Slicer Hands-on Workshop==
 
==Image-Guided Therapy Research using Open Source Free Software 3D Slicer Hands-on Workshop==
 
'''at Shiga University of Medical Science, on March 26, 2015.'''
 
'''at Shiga University of Medical Science, on March 26, 2015.'''
−
The objective of this workshop is to learn the usage of 3D Slicer and how to join Slicer community from Japan in the context of Image guided therapy research and medical engineering. Participants will bring their own laptop, install 3D Slicer, and experience image segmentation and non-rigid registration using real clinical data. The lectured will be given by local Japanese expert in 3D Slicer using Japanese version of the tutorial slides. The workshop is followed by live demonstration by a IGT researchers from Brigham and Women's Hospital and Shiga University of Medical Science modifying 3D Slicer to tailor his need.  
+
 
 +
The objective of this workshop is to learn what 3D Slicer is including the community activities and the license and the usage of 3D Slicer in clinical case in the context of Image guided therapy research and medical engineering. Participants will bring their own laptop, install 3D Slicer, and experience image segmentation and non-rigid registration using real clinical data. The lectured will be given by local Japanese expert in 3D Slicer using Japanese version of the tutorial slides. The workshop is followed by live demonstration by a IGT researchers from Brigham and Women's Hospital and Shiga University of Medical Science modifying 3D Slicer to tailor his need.  
 +
 
 
----
 
----
 +
 +
== Pictures ==
 +
[[File:Shiga_2015_Workshop3.jpg|300px]] [[File:Shiga_2015_Workshop.jpg|300px]] [[File:Shiga_2015_Workshop2.jpg|300px]]
  
 
==Course Organizers==
 
==Course Organizers==
 +
*Atsushi Yamada PhD, Biomedical Innovation Center, Shiga University of Medical Science
 
*Tohru Tani MD PhD, Biomedical Innovation Center, Shiga University of Medical Science
 
*Tohru Tani MD PhD, Biomedical Innovation Center, Shiga University of Medical Science
 +
*Shigeyuki Naka MD PhD, Department of Surgery, Shiga University of Medical Science
 
*Junichi Tokuda PhD, Department of Radiology, Brigham and Women's Hospital and Harvard Medical School
 
*Junichi Tokuda PhD, Department of Radiology, Brigham and Women's Hospital and Harvard Medical School
−
*Atsushi Yamada PhD, Biomedical Innovation Center, Shiga University of Medical Science
 
  
 
==Organizers==
 
==Organizers==
−
*'''Biomedical Innovation Center, Shiga University of Medical Science''' ([[http://www.shiga-med.ac.jp Japanese]) ([http://www.shiga-med.ac.jp/e/index.html English])
+
*'''Biomedical Innovation Center, Shiga University of Medical Science''' ([http://www.shiga-med.ac.jp Japanese]) ([http://www.shiga-med.ac.jp/e/index.html English])
 
*[http://www.na-mic.org National Alliance for Medical Image Computing]
 
*[http://www.na-mic.org National Alliance for Medical Image Computing]
 
*[http://www.ncigt.org  National Center for Image Guided Therapy]
 
*[http://www.ncigt.org  National Center for Image Guided Therapy]
  
−
==Supports==
+
==Support==
 
*'''[http://www.micronshiga.com Micron Shiga Inc.（株式会社マイクロン滋賀）]'''
 
*'''[http://www.micronshiga.com Micron Shiga Inc.（株式会社マイクロン滋賀）]'''
  
 
==Lecturers==
 
==Lecturers==
−
*'''Soichiro Tani MD, Brigham and Women's Hospital Harvard Medical School / Shiga University of Medical Science'''
+
*'''Soichiro Tani MD, Brigham and Women's Hospital and Harvard Medical School / Shiga University of Medical Science'''
−
*Junichi Tokuda PhD, Brigham and Women's Hospital Harvard Medical School
 
 
*'''Atsushi Yamada PhD, Shiga University of Medical Science'''
 
*'''Atsushi Yamada PhD, Shiga University of Medical Science'''
 +
*Junichi Tokuda PhD, Brigham and Women's Hospital and Harvard Medical School
 +
*Koichiro Murakami MD PhD, Shiga University of Medical Science
  
 
==Date/ Place==
 
==Date/ Place==
Line 40: Line 47:
 
== Agenda  ==
 
== Agenda  ==
  
−
*Target audience: Engineers, Surgeon, Radiologists, Physicians, Fellows, and Residents  
+
*'''Target audience: Engineers, Surgeon, Radiologists, Physicians, Fellows, and Residents'''
  
 
*13:00-13:15 Opening remarks by the organizer (Tohru Tani)
 
*13:00-13:15 Opening remarks by the organizer (Tohru Tani)
−
*13:15-13:45 3D Slicerによる前立腺生検サポートの経験 (Soichiro Tani)
+
*13:15-13:45 [[Media:ImagingInNeuroscience April8-3DSlicer SoniaPujol.pdf|What is 3D Slicer? / How to join Slicer community]] (Atsushi Yamada, Junichi Tokuda)
−
*13:45-14:45 肝穿刺レジストレーションのライブデモ&Tutorial (Soichiro Tani, Junichi Tokuda)
+
*13:45-14:15 3D Slicerによる前立腺生検サポートの経験 (Soichiro Tani)
−
*14:45-15:00 Break
+
*14:15-15:15 Live demonstration and tutorial of liver registration for CT-guided cryo ablation (Soichiro Tani, Junichi Tokuda)
−
*15:00-16:00 Slicer community (Atsushi Yamada)
+
*15:15-15:30 Break
 +
*15:30-16:00 Modifying 3D Slicer to tailor a real-time MR endoscopic navigation system (Atsushi Yamada, Koichiro Murakami)  
 
*16:00-16:30 Discussion
 
*16:00-16:30 Discussion
 
----
 
----
Line 54: Line 62:
 
datasets:
 
datasets:
 
* Software
 
* Software
−
**[http://download.slicer.org/ 3DSlicer version 4.4.0 stable release]
+
**3D Slicer4
−
*Dataset
+
***[http://slicer.kitware.com/midas3/download/?items=173571 Windows 64 bit]
−
**[[media:3DVisualizationData.zip‎|Dataset 1: 3D Visualization Data]]
+
***[http://slicer.kitware.com/midas3/download/?items=173502 Mac OS X]
−
**[[media:DiffusionMRI_tutorialData.zip| Dataset 2: DiffusionMR]]
+
***[http://slicer.kitware.com/midas3/download/?items=173508 Linux]
−
**[[media:WhiteMatterExplorationData.zip‎| Dataset 3: Neurosurgical Planning]]
+
* Datasets
 +
**[http://www.slicer.org/slicerWiki/images/4/46/QuantitativeImaging.zip Non-rigid registration tutorial Image Datasets]
 +
**[[Media:Label_Data.zip|Prepared Label Datasets]]
  
−
==Place==
+
==Past Events in Japan==
−
*
+
*[http://www.na-mic.org/Wiki/index.php/2013_Juntendo_University 2013 Juntendo University Tokyo]
−
====Campus map of Shiga University of Medical Science====
+
*[http://www.na-mic.org/Wiki/index.php/Iwate_2013_Training Iwate 2013 Training]
−
 
+
*[http://www.na-mic.org/Wiki/index.php/Tokyo_2013_Training Tokyo 2013 Training]
−
==Access==
+
*[http://www.na-mic.org/Wiki/index.php/Events:Slicer-Hands-On-Hiroshima-2011 Slicer Hands-on Hiroshima 2011]
−
 
+
*[http://www.na-mic.org/Wiki/index.php/Events:Slicer-Hands-On-Tokyo-2010 Slicer-Hands-On Meeting at Tokyo Women’s Medical University in 2010]
−
 
+
*[http://www.na-mic.org/Wiki/index.php/SlicerNagoyaJune2009Workshop Slicer Nagoya June 2009 Workshop]
−
 
+
*[http://www.na-mic.org/Wiki/index.php/SlicerKyusyuJune2009Lecture Slicer Kyushu June 2009 Lecture]
−
==Past Events==
 
−
[[File:RSNA.jpg]]
 
−
*[[RSNA_2012 | 98th Annual Meeting of the Radiological Society of North America (RSNA 2012)]] Chicago, IL, USA
 
−
[[File:DrKikinis.jpg]]
 
−
*Professor Ron Kikinis giving a lecture at the [http://www.na-mic.org/Wiki/index.php/Events:Slicer-Hands-On-Tokyo-2010 Slicer-Hands-On Meeting] Tokyo Women’s Medical University in 2010.
 
−
[[File:DrHata.jpg]]
 
−
*Lecture by Dr. Nobuhiko Hata at the [http://www.na-mic.org/Wiki/index.php/Events:Slicer-Hands-On-Tokyo-2010 Slicer-Hands-On Meeting] Tokyo Women’s Medical University in 2010.
 
  
 
==Registration==
 
==Registration==
Line 84: Line 87:
  
 
==Participants list==
 
==Participants list==
−
*1.山田篤史　バイオメディカル・イノベーションセンター，滋賀医科大学, Mac OS X 10.8.3
+
*1.山田篤史　　バイオメディカル・イノベーションセンター，滋賀医科大学, Mac OS X 10.8.3
−
*2.谷徹　バイオメディカル・イノベーションセンター，滋賀医科大学, Windows7 64bit
+
*2.谷徹　　　　バイオメディカル・イノベーションセンター，滋賀医科大学, Windows7 64bit
−
*3.徳田淳一　Department of Radiology, Brigham and Women's Hospital and Harvard Medical School, Mac OS X 10.10.2
+
*3.仲成幸　　　外科学講座消化器外科，滋賀医科大学，WIndows7 64bit
−
*4.谷総一郎　Department of Radiology, Brigham and Women's Hospital and Harvard Medical School / バイオメディカル・イノベーションセンター，滋賀医科大学, Mac OS X 10.10.2
+
*4.徳田淳一　　Department of Radiology, Brigham and Women's Hospital and Harvard Medical School, Mac OS X 10.10.2
−
*5.村上耕一郎　外科学講座消化器外科，滋賀医科大学， Mac OS X 10.10.2
+
*5.谷総一郎　　Department of Radiology, Brigham and Women's Hospital and Harvard Medical School / バイオメディカル・イノベーションセンター，滋賀医科大学, Mac OS X 10.10.2
−
 
+
*6.村上耕一郎　外科学講座消化器外科，滋賀医科大学， Mac OS X 10.10.2
−
Back to [http://www.na-mic.org/Wiki/index.php/Events NA-MIC Events]
+
*7.森川茂廣　　基礎看護学講座，滋賀医科大学，Mac OS X 10.10.2
 +
*8.健山智子　　立命館大学, Mac OS X 10.10.2
 +
*9.李迎博　　　立命館大学 Mac OS X 10.10.2
 +
*10.田中彰恵　外科学講座乳腺外科，滋賀医科大学，Mac OS X 10.10.2
 +
*11.橋本雅之　呼吸器外科，滋賀医科大学，Windows 8

Latest revision as of 09:30, 6 July 2015

Home < Shiga 2015 Workshop

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Slicer Hands-on Tutorial, March 26, 2015, Shiga University of Medical Science, Japan Slicer4Announcement-HiRes.png


Image-Guided Therapy Research using Open Source Free Software 3D Slicer Hands-on Workshop

at Shiga University of Medical Science, on March 26, 2015.

The objective of this workshop is to learn what 3D Slicer is including the community activities and the license and the usage of 3D Slicer in clinical case in the context of Image guided therapy research and medical engineering. Participants will bring their own laptop, install 3D Slicer, and experience image segmentation and non-rigid registration using real clinical data. The lectured will be given by local Japanese expert in 3D Slicer using Japanese version of the tutorial slides. The workshop is followed by live demonstration by a IGT researchers from Brigham and Women's Hospital and Shiga University of Medical Science modifying 3D Slicer to tailor his need.

Pictures

Shiga 2015 Workshop3.jpg Shiga 2015 Workshop.jpg Shiga 2015 Workshop2.jpg

Course Organizers

  • Atsushi Yamada PhD, Biomedical Innovation Center, Shiga University of Medical Science
  • Tohru Tani MD PhD, Biomedical Innovation Center, Shiga University of Medical Science
  • Shigeyuki Naka MD PhD, Department of Surgery, Shiga University of Medical Science
  • Junichi Tokuda PhD, Department of Radiology, Brigham and Women's Hospital and Harvard Medical School

Organizers

Support

Lecturers

  • Soichiro Tani MD, Brigham and Women's Hospital and Harvard Medical School / Shiga University of Medical Science
  • Atsushi Yamada PhD, Shiga University of Medical Science
  • Junichi Tokuda PhD, Brigham and Women's Hospital and Harvard Medical School
  • Koichiro Murakami MD PhD, Shiga University of Medical Science

Date/ Place

Agenda

  • Target audience: Engineers, Surgeon, Radiologists, Physicians, Fellows, and Residents
  • 13:00-13:15 Opening remarks by the organizer (Tohru Tani)
  • 13:15-13:45 What is 3D Slicer? / How to join Slicer community (Atsushi Yamada, Junichi Tokuda)
  • 13:45-14:15 3D Slicerによる前立腺生検サポートの経験 (Soichiro Tani)
  • 14:15-15:15 Live demonstration and tutorial of liver registration for CT-guided cryo ablation (Soichiro Tani, Junichi Tokuda)
  • 15:15-15:30 Break
  • 15:30-16:00 Modifying 3D Slicer to tailor a real-time MR endoscopic navigation system (Atsushi Yamada, Koichiro Murakami)
  • 16:00-16:30 Discussion

Preparation

For this session, please download the following software and datasets:

Past Events in Japan

Registration

  • Free
  • To sign up for this event, please send your information (name, organization, type of operating system) by e-mail to Atsushi Yamada, PhD (ayamada@belle.shiga-med.ac.jp).

NA-MIC Events

Back to NA-MIC Events

Participants list

  • 1.山田篤史　　バイオメディカル・イノベーションセンター，滋賀医科大学, Mac OS X 10.8.3
  • 2.谷徹　　　　バイオメディカル・イノベーションセンター，滋賀医科大学, Windows7 64bit
  • 3.仲成幸　　　外科学講座消化器外科，滋賀医科大学，WIndows7 64bit
  • 4.徳田淳一　　Department of Radiology, Brigham and Women's Hospital and Harvard Medical School, Mac OS X 10.10.2
  • 5.谷総一郎　　Department of Radiology, Brigham and Women's Hospital and Harvard Medical School / バイオメディカル・イノベーションセンター，滋賀医科大学, Mac OS X 10.10.2
  • 6.村上耕一郎　外科学講座消化器外科，滋賀医科大学， Mac OS X 10.10.2
  • 7.森川茂廣　　基礎看護学講座，滋賀医科大学，Mac OS X 10.10.2
  • 8.健山智子　　立命館大学, Mac OS X 10.10.2
  • 9.李迎博　　　立命館大学 Mac OS X 10.10.2
  • 10.田中彰恵　外科学講座乳腺外科，滋賀医科大学，Mac OS X 10.10.2
  • 11.橋本雅之　呼吸器外科，滋賀医科大学，Windows 8
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