Difference between revisions of "2015 Multi atlas based prostate segmentation"
From NAMIC Wiki
| (9 intermediate revisions by the same user not shown) | |||
| Line 2: | Line 2: | ||
<gallery> | <gallery> | ||
Image:PW-Summer2015.png|[[2015_Summer_Project_Week#Projects|Projects List]] | Image:PW-Summer2015.png|[[2015_Summer_Project_Week#Projects|Projects List]] | ||
| − | Image:Prostate segmentation.png | + | Image:Prostate segmentation.png| Before project week |
| + | Image:Plastimatch_MABS_prostate_1.png| At the and of the project week | ||
</gallery> | </gallery> | ||
==Key Investigators== | ==Key Investigators== | ||
| − | * Paolo Zaffino, ImagEngLab UMG | + | * Paolo Zaffino, ImagEngLab - UMG |
| − | * Giampaolo Pileggi, ImagEngLab UMG | + | * Giampaolo Pileggi, ImagEngLab - UMG |
| − | * Salvatore Scaramuzzino, ImagEngLab UMG | + | * Salvatore Scaramuzzino, ImagEngLab - UMG |
* Peter Behringer, BWH | * Peter Behringer, BWH | ||
* Andrey Fedorov, BWH | * Andrey Fedorov, BWH | ||
| − | * Maria Francesca Spadea, ImagEngLab UMG | + | * Maria Francesca Spadea, ImagEngLab - UMG |
==Project Description== | ==Project Description== | ||
| Line 17: | Line 18: | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
<h3>Objective</h3> | <h3>Objective</h3> | ||
| − | * | + | * Automatic segmentation of prostate gland on MRI data for preoperative planning and/or guided biopsy. |
</div> | </div> | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
<h3>Approach, Plan</h3> | <h3>Approach, Plan</h3> | ||
| − | * | + | * Use [http://www.plastimatch.org/mabs_guidebook.html Plastimatch MABS] software and the [http://www.spl.harvard.edu/publications/item/view/2147 public database hosted by SPL] |
</div> | </div> | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
<h3>Progress</h3> | <h3>Progress</h3> | ||
| − | * | + | * Preliminary results (before project week): |
| + | Dice coefficient: | ||
| + | median = 0.704 | ||
| + | |||
| + | 5° percentile = 0.485 | ||
| + | |||
| + | 95° percentile = 0.850 | ||
| + | |||
| + | Average Hausdorff Distance (mm): | ||
| + | median = 3.691 | ||
| + | |||
| + | 5° percentile = 1.790 | ||
| + | |||
| + | 95° percentile = 7.124 | ||
| + | |||
| + | 95° percentile Hausdorff Distance (mm): | ||
| + | median = 8.903 | ||
| + | |||
| + | 5° percentile = 4.988 | ||
| + | |||
| + | 95° percentile = 17.498 | ||
| + | |||
| + | Required time: | ||
| + | |||
| + | roughly 10 minutes per case. | ||
| + | |||
| + | |||
| + | * Added in Plastimatch the registration initialization based on the alignment of center of gravity of contours | ||
| + | |||
| + | |||
| + | * Tuned deformable registration parameters | ||
| + | |||
| + | |||
| + | * Tuned atlas selection parameters | ||
| + | |||
| + | |||
| + | * Currently results (at the end of the project week): | ||
| + | Dice coefficient: | ||
| + | median = 0.778 | ||
| + | |||
| + | 5° percentile = 0.482 | ||
| + | |||
| + | 95° percentile = 0.854 | ||
| + | |||
| + | Average Hausdorff Distance (mm): | ||
| + | median = 3.005 | ||
| + | |||
| + | 5° percentile = 1.632 | ||
| + | |||
| + | 95° percentile = 6.750 | ||
| + | |||
| + | 95° percentile Hausdorff Distance (mm): | ||
| + | median = 8.133 | ||
| + | |||
| + | 5° percentile = 4.448 | ||
| + | |||
| + | 95° percentile = 12.895 | ||
| + | |||
| + | Required time: | ||
| + | |||
| + | roughly 2 minutes per case. | ||
| + | |||
| + | |||
</div> | </div> | ||
</div> | </div> | ||
Latest revision as of 13:51, 24 June 2015
Home < 2015 Multi atlas based prostate segmentation
Before project week
At the and of the project week
Key Investigators
- Paolo Zaffino, ImagEngLab - UMG
- Giampaolo Pileggi, ImagEngLab - UMG
- Salvatore Scaramuzzino, ImagEngLab - UMG
- Peter Behringer, BWH
- Andrey Fedorov, BWH
- Maria Francesca Spadea, ImagEngLab - UMG
Project Description
Objective
- Automatic segmentation of prostate gland on MRI data for preoperative planning and/or guided biopsy.
Approach, Plan
- Use Plastimatch MABS software and the public database hosted by SPL
Progress
- Preliminary results (before project week):
Dice coefficient: median = 0.704
5° percentile = 0.485
95° percentile = 0.850
Average Hausdorff Distance (mm): median = 3.691
5° percentile = 1.790
95° percentile = 7.124
95° percentile Hausdorff Distance (mm): median = 8.903
5° percentile = 4.988
95° percentile = 17.498
Required time:
roughly 10 minutes per case.
- Added in Plastimatch the registration initialization based on the alignment of center of gravity of contours
- Tuned deformable registration parameters
- Tuned atlas selection parameters
- Currently results (at the end of the project week):
Dice coefficient: median = 0.778
5° percentile = 0.482
95° percentile = 0.854
Average Hausdorff Distance (mm): median = 3.005
5° percentile = 1.632
95° percentile = 6.750
95° percentile Hausdorff Distance (mm): median = 8.133
5° percentile = 4.448
95° percentile = 12.895
Required time:
roughly 2 minutes per case.
