Difference between revisions of "2015 Summer Project Week:LungCAD"
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Image:PW-Summer2015.png|[[2015_Summer_Project_Week#Projects|Projects List]] | Image:PW-Summer2015.png|[[2015_Summer_Project_Week#Projects|Projects List]] | ||
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==Key Investigators== | ==Key Investigators== | ||
| − | * Jayender Jagadeesan | + | * Jayender Jagadeesan (BWH) |
| − | * Tobias Penskofer | + | * Tobias Penskofer (Charite, Berlin) |
| − | * Sandy Wells | + | * Sandy Wells (BWH) |
| + | * Clara Meiner (previously BWH) | ||
| + | * Raul San Jose Estepar (BWH) | ||
| + | * Jorge Onieva (BWH) | ||
==Project Description== | ==Project Description== | ||
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<h3>Objective</h3> | <h3>Objective</h3> | ||
* Develop a module in 3D Slicer to segment the ground glass opacity (GGO) tumor, apply [https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/HeterogeneityCAD HeterogeneityCAD] to obtain imaging metrics and classify the GGO. | * Develop a module in 3D Slicer to segment the ground glass opacity (GGO) tumor, apply [https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/HeterogeneityCAD HeterogeneityCAD] to obtain imaging metrics and classify the GGO. | ||
| + | * Provide the module as an extension part of [https://www.slicer.org/wiki/Documentation/Nightly/Extensions/OpenCAD OpenCAD] | ||
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<h3>Progress</h3> | <h3>Progress</h3> | ||
| − | + | * Completed analysis for 248 GGOs and trained SVM with an accuracy of 89% to classify GGOs | |
| + | * Developed the framework for the LungCAD module in Slicer | ||
| + | * Evaluated the Lesion segmentation algorithm as part of the Chest Imaging Platform | ||
| + | * Segmentation works well and is able to prevent the segmentation of vessels running through the lesion | ||
| + | * LungCAD calls Lesion Segmentation CLI for segmentation and HeterogeneityCAD to evaluate features | ||
| + | * Pre-processed SVM will be utilized to classify the GGOs | ||
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Latest revision as of 18:07, 10 July 2017
Home < 2015 Summer Project Week:LungCAD
Key Investigators
- Jayender Jagadeesan (BWH)
- Tobias Penskofer (Charite, Berlin)
- Sandy Wells (BWH)
- Clara Meiner (previously BWH)
- Raul San Jose Estepar (BWH)
- Jorge Onieva (BWH)
Project Description
Objective
- Develop a module in 3D Slicer to segment the ground glass opacity (GGO) tumor, apply HeterogeneityCAD to obtain imaging metrics and classify the GGO.
- Provide the module as an extension part of OpenCAD
Approach, Plan
- Implement a simple region growing algorithm
- Apply HeterogeneityCAD module
- Use predetermined SVM classifier to decide the lesion type
Progress
- Completed analysis for 248 GGOs and trained SVM with an accuracy of 89% to classify GGOs
- Developed the framework for the LungCAD module in Slicer
- Evaluated the Lesion segmentation algorithm as part of the Chest Imaging Platform
- Segmentation works well and is able to prevent the segmentation of vessels running through the lesion
- LungCAD calls Lesion Segmentation CLI for segmentation and HeterogeneityCAD to evaluate features
- Pre-processed SVM will be utilized to classify the GGOs
