Difference between revisions of "2016 Winter Project Week/Projects/BRAINSFit in MeVisLab"

From NAMIC Wiki
Jump to: navigation, search
 
(10 intermediate revisions by 3 users not shown)
Line 2: Line 2:
 
<gallery>
 
<gallery>
 
Image:PW-Summer2015.png|[[2015_Summer_Project_Week#Projects|Projects List]]
 
Image:PW-Summer2015.png|[[2015_Summer_Project_Week#Projects|Projects List]]
 +
Image:CLI_BrainsFIT_in_MeVisLab.png|Screenshot of CLI_BrainsFIT module panel in MeVisLab
 
</gallery>
 
</gallery>
  
Line 7: Line 8:
 
* Hans Meine
 
* Hans Meine
 
* Steve Pieper
 
* Steve Pieper
 +
* Adam Rankin (observer)
  
 
==Project Description==
 
==Project Description==
−
<div style="margin: 20px;">
+
{| class="wikitable"
−
<div style="width: 27%; float: left; padding-right: 3%;">
+
! style="text-align: left; width:27%" |  Objective
−
<h3>Objective</h3>
+
! style="text-align: left; width:27%" |  Approach and Plan
 +
! style="text-align: left; width:27%" |  Progress and Next Steps
 +
|- style="vertical-align:top;"
 +
|
 +
<!-- Objective bullet points -->
 
* Perform interoperability tests with "interesting" CLI modules in MeVisLab
 
* Perform interoperability tests with "interesting" CLI modules in MeVisLab
 
* Leverage Siemens' Syngo.Frontier platform for integrating CLI modules
 
* Leverage Siemens' Syngo.Frontier platform for integrating CLI modules
−
</div>
+
|
−
<div style="width: 27%; float: left; padding-right: 3%;">
 
−
<h3>Approach, Plan</h3>
 
 
* Potentially interesting CLIs discussed so far:
 
* Potentially interesting CLIs discussed so far:
 
** BrainsFIT
 
** BrainsFIT
 
** CIP (Chest Imaging Platform)
 
** CIP (Chest Imaging Platform)
 
** UKFTractography
 
** UKFTractography
−
* Identify and address potential blockers for using these CLIs in MeVisLab/Frontier
+
* Identify and address potential blockers for using these CLIs in MeVisLab/[http://www.healthcare.siemens.de/computed-tomography/clinical-imaging-solutions/syngo-via-frontier Frontier]
 
* Design a small demo GUI / visualization
 
* Design a small demo GUI / visualization
−
</div>
+
* Also check interoperability with fiducial support (cf. Nicole's [[2015_Summer_Project_Week:Return_Fiducials_from_CLIs | recent coordinate system fixes]])
−
<div style="width: 27%; float: left; padding-right: 3%;">
+
|
−
<h3>Progress</h3>
+
* pointfile support added to [https://github.com/commontk/ctk-cli ctk-cli]
−
</div>
+
* ctk-cli properly moved to MeVisLab's ThirdParty repository
−
</div>
+
* [https://github.com/commontk/CTK/issues/622 Issue filed] about pointfile addition to spec / XSD
−
<h3>Related Links</h3>
+
* got simple network with CIP's CLI modules running in MeVisLab
 +
** no fatal issues
 +
** only one seed point can be passed to lesion segmentation
 +
|}
 +
 
 +
==Background and References==
 
* Demo of CLI modules in MeVisLab: https://www.youtube.com/watch?v=FSCrmiWEcbA
 
* Demo of CLI modules in MeVisLab: https://www.youtube.com/watch?v=FSCrmiWEcbA
 
* Previous Project Week project from 2013: [[2013_Summer_Project_Week:CLI_modules_in_MeVisLab|CLI modules in MeVisLab]]
 
* Previous Project Week project from 2013: [[2013_Summer_Project_Week:CLI_modules_in_MeVisLab|CLI modules in MeVisLab]]
 +
* Link to additional planning documents (only accessible with account): https://collab.mevis.fraunhofer.de/display/CLIFD/CLI-Frontier+Demo+Home

Latest revision as of 22:49, 6 January 2016

Home < 2016 Winter Project Week < Projects < BRAINSFit in MeVisLab

  • Screenshot of CLI_BrainsFIT module panel in MeVisLab

Key Investigators

  • Hans Meine
  • Steve Pieper
  • Adam Rankin (observer)

Project Description

Objective Approach and Plan Progress and Next Steps
  • Perform interoperability tests with "interesting" CLI modules in MeVisLab
  • Leverage Siemens' Syngo.Frontier platform for integrating CLI modules
  • Potentially interesting CLIs discussed so far:
    • BrainsFIT
    • CIP (Chest Imaging Platform)
    • UKFTractography
  • Identify and address potential blockers for using these CLIs in MeVisLab/Frontier
  • Design a small demo GUI / visualization
  • Also check interoperability with fiducial support (cf. Nicole's recent coordinate system fixes)
  • pointfile support added to ctk-cli
  • ctk-cli properly moved to MeVisLab's ThirdParty repository
  • Issue filed about pointfile addition to spec / XSD
  • got simple network with CIP's CLI modules running in MeVisLab
    • no fatal issues
    • only one seed point can be passed to lesion segmentation

Background and References

Retrieved from "https://www.na-mic.org/w/index.php?title=2016_Winter_Project_Week/Projects/BRAINSFit_in_MeVisLab&oldid=91785"