Difference between revisions of "UNC 2015"
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=Introduction= | =Introduction= | ||
The 3D Slicer UNC workshop is a full day course that will combine a series of lectures and hands-on sessions using the 3D Slicer software. The morning session will provide an introduction to the basics of data loading, 3D visualization and image registration. The afternoon session will focus on fundamental and practical aspects of Diffusion MRI analysis. | The 3D Slicer UNC workshop is a full day course that will combine a series of lectures and hands-on sessions using the 3D Slicer software. The morning session will provide an introduction to the basics of data loading, 3D visualization and image registration. The afternoon session will focus on fundamental and practical aspects of Diffusion MRI analysis. | ||
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*9:15-9:30 am Welcome and Goals of the Workshop (Martin Styner) | *9:15-9:30 am Welcome and Goals of the Workshop (Martin Styner) | ||
*9:30-10:00 am Introduction to the 3D Slicer software and community (Sonia Pujol) | *9:30-10:00 am Introduction to the 3D Slicer software and community (Sonia Pujol) | ||
| − | *10:00-11:00 am Hands-on session 1: 3D Data Loading and Visualization (partI) (Sonia Pujol) | + | *10:00-11:00 am Hands-on session 1: [https://na-mic.org/w/images/7/71/3DDataLoadingandVisualization_SoniaPujol_slicer4.4.pdf 3D Data Loading and Visualization (partI)](Sonia Pujol) |
*11:00-11:15 am Coffee break | *11:00-11:15 am Coffee break | ||
| − | *11:15-12:15 pm Hands on session2: Image registration (Sonia Pujol) | + | *11:15-12:15 pm Hands on session2: [[media:RegistrationTutorial_SoniaPujol_UNC2015.pdf | Image registration (Sonia Pujol)]] |
*12:15-1:30 pm Lunch | *12:15-1:30 pm Lunch | ||
| − | *1:30 pm-2:15 pm An Introduction to Diffusion Tensor Imaging (Sonia Pujol) | + | *1:30 pm-2:15 pm [[media:DiffusionMRIanalysis Tutorial SoniaPujol UNC2015.pdf| An Introduction to Diffusion Tensor Imaging ]] (Sonia Pujol) |
*2:15 pm-2:45 pm The DTI Prep Tool [[Media:2015-DTIPrep.pdf | PDF Slides]] (Martin Styner/Francois Budin) | *2:15 pm-2:45 pm The DTI Prep Tool [[Media:2015-DTIPrep.pdf | PDF Slides]] (Martin Styner/Francois Budin) | ||
*2:45 pm -3:00 pm Coffee Break | *2:45 pm -3:00 pm Coffee Break | ||
| − | *3:00-3:45 pm White Matter exploration for Neurosurgical Planning (Sonia Pujol) | + | *3:00-3:45 pm [[media:WhiteMatterExplorationTutorial_SoniaPujol_UNC2015.pdf | White Matter exploration for Neurosurgical Planning (Sonia Pujol)]] |
*3:45-4:30 pm 3D Slicer UNC demos (Martin Styner/Francois Budin) using DTI-Reg [[Media:2015-DTI-Reg-Tutorial.pptx.pdf | PDF Slides]], FiberViewerLight and DTIAtlasFiberAnalyzer | *3:45-4:30 pm 3D Slicer UNC demos (Martin Styner/Francois Budin) using DTI-Reg [[Media:2015-DTI-Reg-Tutorial.pptx.pdf | PDF Slides]], FiberViewerLight and DTIAtlasFiberAnalyzer | ||
*4:30-5:00 pm Questions from the audience and concluding remarks | *4:30-5:00 pm Questions from the audience and concluding remarks | ||
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* Workshop Materials: The workshop will be a series of hands-on sessions using Slicer 4.4 and 4.3.1 release versions (http://slicer.org or http://slicer.kitware.com/midas3/slicerpackages/view) and the following datasets: | * Workshop Materials: The workshop will be a series of hands-on sessions using Slicer 4.4 and 4.3.1 release versions (http://slicer.org or http://slicer.kitware.com/midas3/slicerpackages/view) and the following datasets: | ||
**[[Media:3DVisualizationData.zip | 3D Visualization Dataset]] | **[[Media:3DVisualizationData.zip | 3D Visualization Dataset]] | ||
| − | **[[ | + | **[[Media:Dti_tutorial_data.zip |Slicer DTI tutorial Dataset]] |
| + | **[[Media:SlicerWorkshop-UNC-20150611.zip | DTIPrep Diffusion Dataset]] | ||
**[[Media:WhiteMatterExplorationData.zip|White Matter Exploration dataset]] | **[[Media:WhiteMatterExplorationData.zip|White Matter Exploration dataset]] | ||
**[[Media:RegistrationData.zip|Registration dataset]] | **[[Media:RegistrationData.zip|Registration dataset]] | ||
* Registration: To register to the event, please fill in the [https://docs.google.com/a/cs.unc.edu/forms/d/1to_wiVc921cbgTYtqrJcB8xnlciLp6C8sAMGU8z3c7A/viewform online registration]. In case that the online registration does not work, you can also use the[[Media:RegistrationForm_SlicerWorkshop_UNC2015.doc| UNC registration form]] and send it to Alden Sharpe (ajsharpe at cs.unc.edu). | * Registration: To register to the event, please fill in the [https://docs.google.com/a/cs.unc.edu/forms/d/1to_wiVc921cbgTYtqrJcB8xnlciLp6C8sAMGU8z3c7A/viewform online registration]. In case that the online registration does not work, you can also use the[[Media:RegistrationForm_SlicerWorkshop_UNC2015.doc| UNC registration form]] and send it to Alden Sharpe (ajsharpe at cs.unc.edu). | ||
| + | * Download an Ubuntu Virtual Machine with Slicer 4.4 [https://drive.google.com/file/d/0B024c-nPOGSdVW9jVW15U3YxMUU/view?usp=sharing here] | ||
Latest revision as of 18:27, 10 July 2017
Home < UNC 2015
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Introduction
The 3D Slicer UNC workshop is a full day course that will combine a series of lectures and hands-on sessions using the 3D Slicer software. The morning session will provide an introduction to the basics of data loading, 3D visualization and image registration. The afternoon session will focus on fundamental and practical aspects of Diffusion MRI analysis.
Workshop Organizers
- Sonia Pujol, Ph.D., Brigham and Women's Hospital, Harvard Medical School
- Martin Styner, Ph.D., University of North Carolina at Chapel Hill
Local Host
- Martin Styner, Ph.D., University of North Carolina at Chapel Hill
Tentative Agenda
- 9:00-9:15 am Computer setup assistance by the instructors
- 9:15-9:30 am Welcome and Goals of the Workshop (Martin Styner)
- 9:30-10:00 am Introduction to the 3D Slicer software and community (Sonia Pujol)
- 10:00-11:00 am Hands-on session 1: 3D Data Loading and Visualization (partI)(Sonia Pujol)
- 11:00-11:15 am Coffee break
- 11:15-12:15 pm Hands on session2: Image registration (Sonia Pujol)
- 12:15-1:30 pm Lunch
- 1:30 pm-2:15 pm An Introduction to Diffusion Tensor Imaging (Sonia Pujol)
- 2:15 pm-2:45 pm The DTI Prep Tool PDF Slides (Martin Styner/Francois Budin)
- 2:45 pm -3:00 pm Coffee Break
- 3:00-3:45 pm White Matter exploration for Neurosurgical Planning (Sonia Pujol)
- 3:45-4:30 pm 3D Slicer UNC demos (Martin Styner/Francois Budin) using DTI-Reg PDF Slides, FiberViewerLight and DTIAtlasFiberAnalyzer
- 4:30-5:00 pm Questions from the audience and concluding remarks
Logistics
- Date: Thursday June 11, 2015
- Location: Brooks Hall, FB 141
- Workshop Materials: The workshop will be a series of hands-on sessions using Slicer 4.4 and 4.3.1 release versions (http://slicer.org or http://slicer.kitware.com/midas3/slicerpackages/view) and the following datasets:
- Registration: To register to the event, please fill in the online registration. In case that the online registration does not work, you can also use the UNC registration form and send it to Alden Sharpe (ajsharpe at cs.unc.edu).
- Download an Ubuntu Virtual Machine with Slicer 4.4 here
