Difference between revisions of "2016 Winter Project Week/Projects/Tractography format interoperability"

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==Project Description==
 
==Project Description==
 
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! style="text-align: left; width:27%" |  Objective
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! style="text-align: left; width:27%" |  Approach and Plan
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! style="text-align: left; width:27%" |  Progress and Next Steps
 
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! style="text-align: left; width:27%" |       Objective
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<!-- Add a bulleted list of key points -->
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* Aim 1: Develop DCMTK and Slicer support for DICOM tractography objects (supplement 181).
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* Develop and test Slicer/DCMTK support for DICOM tractography (supplement 181).
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* Aim 2: Develop Slicer support for DiPy tractography i/o.
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* Develop and test Slicer support for DiPy's HDF5-based "dpy" tract format.
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* Aim 1:  
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! style="text-align: left; width:27%" |      Approach, Plan
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** planning emails and data exchange before project week.
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<!-- Add a bulleted list of key points -->
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** prototype DCMTK support for supplement 181.
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*  
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** (implement Slicer interface to load objects and metadata from DCMTK into tractography nodes?)
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* Aim 2:  
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! style="text-align: left; width:27%" |      Progress
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** implement support for DPY and TrackVis tractography file formats.
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<!-- Fill this out at the end of Project Week; describe what you did this week and what you plan to do next -->
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*
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* Aim 1:
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** productive discussions explaining data processing and structure.
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** designed high-level DCMTK API for accessing tractography objects.
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* Aim 2:
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** Prototyped stand-alone TrackVis reader (custom binary format)
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* Bonus:
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** Finished and submitted PR to move diffusion modules to remote module build: https://github.com/Slicer/Slicer/pull/442
 
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==Background and References==
 
==Background and References==
 
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data -->
 
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data -->
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[http://dicom.nema.org/Dicom/News/June2015/docs/sups/sup181.pdf DICOM Supplement 181]
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[ftp://medical.nema.org/medical/dicom/final/sup181_ft_TractographyResultsStorage.pdf DICOM Supplement 181]

Latest revision as of 14:58, 8 January 2016

Home < 2016 Winter Project Week < Projects < Tractography format interoperability

Key Investigators

  • Michael Onken, OFFIS
  • Isaiah Norton, BWH
  • Lauren O'Donnell, BWH

Project Description

Objective Approach and Plan Progress and Next Steps
  • Aim 1: Develop DCMTK and Slicer support for DICOM tractography objects (supplement 181).
  • Aim 2: Develop Slicer support for DiPy tractography i/o.
  • Aim 1:
    • planning emails and data exchange before project week.
    • prototype DCMTK support for supplement 181.
    • (implement Slicer interface to load objects and metadata from DCMTK into tractography nodes?)
  • Aim 2:
    • implement support for DPY and TrackVis tractography file formats.
  • Aim 1:
    • productive discussions explaining data processing and structure.
    • designed high-level DCMTK API for accessing tractography objects.
  • Aim 2:
    • Prototyped stand-alone TrackVis reader (custom binary format)
  • Bonus:

Background and References

DICOM Supplement 181

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