Difference between revisions of "2016 Winter Project Week/Projects/TractographyModuleDevelop&Test"
From NAMIC Wiki
| (5 intermediate revisions by the same user not shown) | |||
| Line 2: | Line 2: | ||
<gallery> | <gallery> | ||
Image:PW-MIT2016.png|link=2016_Winter_Project_Week#Projects|[[2016_Winter_Project_Week#Projects|Projects List]] | Image:PW-MIT2016.png|link=2016_Winter_Project_Week#Projects|[[2016_Winter_Project_Week#Projects|Projects List]] | ||
| + | File:Tract module.png | ||
<!-- Use the "Upload file" link on the left and then add a line to this list like "File:MyAlgorithmScreenshot.png" --> | <!-- Use the "Upload file" link on the left and then add a line to this list like "File:MyAlgorithmScreenshot.png" --> | ||
</gallery> | </gallery> | ||
| Line 11: | Line 12: | ||
* Isaiah Norton, BWH | * Isaiah Norton, BWH | ||
* Lauren O'Donnell, BWH | * Lauren O'Donnell, BWH | ||
| + | * others | ||
==Project Description== | ==Project Description== | ||
| Line 19: | Line 21: | ||
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
| | | | ||
| + | * Update the existing modules in Tractography category of 3D Slicer, and add testing cases . | ||
* Develop new modules for tractography processing. | * Develop new modules for tractography processing. | ||
| − | |||
| | | | ||
| − | * | + | * FiberTractMeasurements (in Slicer now): Compute a set of different scalar measurements (such as FA and trace) from fiber tracts. |
| + | * FiberTractClean: Using an input whole brain mask, remove spurious fibers that are very parallel to the surface of the mask (e.g. in skull or CSF). Also remove very short fibers (by default those with fewer than 2 points, which are just an artifact of unsuccessful seeding). | ||
| + | * FiberEndPointFromLabelMap: Allow a user to calculate the number of fiber endpoints touching certain regions according to a label map. The label map is provided by users, which can be generated from, e.g., Freesurfer. | ||
| | | | ||
| − | * | + | * Coding - Finished |
| + | * Testing - Finished | ||
| + | * Integration - Ongoing | ||
|} | |} | ||
==Background and References== | ==Background and References== | ||
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --> | <!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --> | ||
Latest revision as of 15:39, 8 January 2016
Home < 2016 Winter Project Week < Projects < TractographyModuleDevelop&Test
Key Investigators
- Fan Zhang, BWH
- Pegah Kahaliardabili, BWH
- Isaiah Norton, BWH
- Lauren O'Donnell, BWH
- others
Project Description
| Objective | Approach and Plan | Progress and Next Steps |
|---|---|---|
|
|
|
