Difference between revisions of "2007 Scientific Report Timeline"
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'''These tables demonstrate that the project is, on the whole, proceeding according to the originally planned schedule.''' | '''These tables demonstrate that the project is, on the whole, proceeding according to the originally planned schedule.''' | ||
− | = Core 1 = | + | = Core 1: Algorithms = |
== Timelines and Milestones == | == Timelines and Milestones == | ||
Line 32: | Line 32: | ||
| Shape in atlas-driven segmentation | | Shape in atlas-driven segmentation | ||
| Year 4 | | Year 4 | ||
− | | | + | | Completed |
|- | |- | ||
| '''MIT''' | | '''MIT''' | ||
Line 38: | Line 38: | ||
| Validate and refine approach | | Validate and refine approach | ||
| Year 5 | | Year 5 | ||
− | | | + | | In Progress |
|- | |- | ||
| '''MIT''' | | '''MIT''' | ||
Line 50: | Line 50: | ||
| Methods to compute statistics of shapes | | Methods to compute statistics of shapes | ||
| Year 4 | | Year 4 | ||
− | | | + | | Completed |
+ | |- | ||
+ | | '''MIT''' | ||
+ | | 2.3 | ||
+ | | Validation of shape methods on application data | ||
+ | | Year 5 | ||
+ | | In progress | ||
|- | |- | ||
| '''MIT''' | | '''MIT''' | ||
Line 57: | Line 63: | ||
| | | | ||
| | | | ||
+ | |- | ||
+ | | '''MIT''' | ||
+ | | 3.1 | ||
+ | | Fiber geometry | ||
+ | | Year 3 | ||
+ | | Completed | ||
|- | |- | ||
| '''MIT''' | | '''MIT''' | ||
| 3.2 | | 3.2 | ||
| Fiber statistics | | Fiber statistics | ||
− | | Year | + | | Year 5 |
− | | | + | | Completed, new developments ongoing |
+ | |- | ||
+ | | '''MIT''' | ||
+ | | 3.3 | ||
+ | | Validation on real data | ||
+ | | Year 5 | ||
+ | | Ongoing | ||
|- | |- | ||
| '''Utah''' | | '''Utah''' | ||
Line 87: | Line 105: | ||
| Year 3 | | Year 3 | ||
| Completed partially, ongoing | | Completed partially, ongoing | ||
+ | |- | ||
+ | | '''Utah''' | ||
+ | | 1.4 | ||
+ | | Segmentation analysis of white matter tracts | ||
+ | | Year 3 | ||
+ | | Algorithms complete/published, refining and applying to Core 3 data. | ||
|- | |- | ||
| '''Utah''' | | '''Utah''' | ||
| 2 | | 2 | ||
− | | | + | | Nonparametric Shape Analysis |
− | | | + | | Year 5 |
− | | | + | | Incomplete, ongoing. |
|- | |- | ||
| '''Utah''' | | '''Utah''' | ||
| 2.1 | | 2.1 | ||
− | | | + | | Framework in place |
| Year 3 | | Year 3 | ||
− | | | + | | Complete |
+ | |- | ||
+ | | '''Utah''' | ||
+ | | 2.2 | ||
+ | | Demonstration on shape of neuranatomy (from Core 3) | ||
+ | | Year 4 | ||
+ | | Complete | ||
|- | |- | ||
| '''Utah''' | | '''Utah''' | ||
− | | 3 | + | | 2.3 |
− | | | + | | Development for multiobject comlexes |
| Year 4 | | Year 4 | ||
− | | Incomplete, ongoing | + | | Complete |
+ | |- | ||
+ | | '''Utah''' | ||
+ | | 2.4 | ||
+ | | Demonstration of NP shape representations on clinical hypotheses from Core 3 | ||
+ | | Year 5 | ||
+ | | Incomplete, ongoing | ||
|- | |- | ||
| '''UNC''' | | '''UNC''' | ||
Line 138: | Line 174: | ||
| '''UNC''' | | '''UNC''' | ||
| 2.2 | | 2.2 | ||
− | | | + | | Geometric characterization of fiber tracts |
| Year 5 | | Year 5 | ||
| Completed | | Completed | ||
Line 149: | Line 185: | ||
|- | |- | ||
| '''GaTech''' | | '''GaTech''' | ||
− | | | + | | 1.1 |
| ITK Implementation of PDEs | | ITK Implementation of PDEs | ||
| Year 2 | | Year 2 | ||
Line 155: | Line 191: | ||
|- | |- | ||
| '''GaTech''' | | '''GaTech''' | ||
− | | | + | | 1.1 |
| Applications to Core 3 data | | Applications to Core 3 data | ||
| Year 4 | | Year 4 | ||
− | | | + | | Completed |
|- | |- | ||
| '''GaTech''' | | '''GaTech''' | ||
− | | | + | | 1.2 |
| New statistic models | | New statistic models | ||
| Year 4 | | Year 4 | ||
− | | Completed --- | + | | Completed |
+ | |- | ||
+ | | '''GaTech''' | ||
+ | | 1.2 | ||
+ | | Shape anaylsis | ||
+ | | Year 4 | ||
+ | | Preliminary results and ongoing | ||
+ | |- | ||
+ | | '''GaTech''' | ||
+ | | 2.0 | ||
+ | | Integration in to Slicer | ||
+ | | Year 4-5 | ||
+ | | Preliminary results and ongoing | ||
|- | |- | ||
| '''MGH''' | | '''MGH''' | ||
Line 206: | Line 254: | ||
| Develop group statistic method | | Develop group statistic method | ||
| Year 2 | | Year 2 | ||
− | | | + | | Partially Complete |
|- | |- | ||
| '''MGH''' | | '''MGH''' | ||
Line 230: | Line 278: | ||
| Develop/optimize segmentation algorithm | | Develop/optimize segmentation algorithm | ||
| Year 3 | | Year 3 | ||
− | | | + | | In Progress |
|- | |- | ||
| '''MGH''' | | '''MGH''' | ||
Line 236: | Line 284: | ||
| Integrate w/ tractography | | Integrate w/ tractography | ||
| Year 4 | | Year 4 | ||
− | | | + | | In Progress |
|- | |- | ||
| '''MGH''' | | '''MGH''' | ||
Line 242: | Line 290: | ||
| Apply on core 3 data | | Apply on core 3 data | ||
| Year 5 | | Year 5 | ||
− | | In | + | | In Queue |
+ | |- | ||
+ | | '''MGH''' | ||
+ | | 4 | ||
+ | | '''Group Morphometry Statistics''' | ||
+ | | | ||
+ | | | ||
+ | |- | ||
+ | | '''MGH''' | ||
+ | | 4.1 | ||
+ | | Develop/optimize statistics algorithms | ||
+ | | Year 3 | ||
+ | | Complete | ||
+ | |- | ||
+ | | '''MGH''' | ||
+ | | 4.2 | ||
+ | | Develop GUI for Linux | ||
+ | | Year 3 | ||
+ | | Partially Complete | ||
+ | |- | ||
+ | | '''MGH''' | ||
+ | | 4.3 | ||
+ | | Slicer integration | ||
+ | | Year 3 | ||
+ | | In Queue | ||
+ | |- | ||
+ | | '''MGH''' | ||
+ | | 4.4 | ||
+ | | Compile application on Windows | ||
+ | | Year 4 | ||
+ | | In Queue | ||
|- | |- | ||
|} | |} | ||
Line 253: | Line 331: | ||
| '''Milestone''' | | '''Milestone''' | ||
| '''Modification''' | | '''Modification''' | ||
+ | |- | ||
+ | | '''MIT''' | ||
+ | | 2.2 | ||
+ | | Methods to compare shape statistics | ||
+ | | Removed, the effort refocused on registration necessary for population studies | ||
|- | |- | ||
| '''MIT''' | | '''MIT''' | ||
| 2.4 | | 2.4 | ||
− | | | + | | Software infrastructure to integrate shape analysis tools into the pipeline for population studies. |
− | | New | + | | New, partially completed |
|- | |- | ||
| '''MIT''' | | '''MIT''' | ||
| 4 | | 4 | ||
− | | | + | | fMRI analysis including local and atlas-based priors for quantifying activation. |
− | | New | + | | New, partially completed |
|- | |- | ||
| '''Utah''' | | '''Utah''' | ||
− | | 2.2 | + | | 2.2 (removed) |
| Feature-based brain image registration. | | Feature-based brain image registration. | ||
| Shift emphasis to shape-based analysis/registration | | Shift emphasis to shape-based analysis/registration | ||
+ | |- | ||
+ | | '''Utah''' | ||
+ | | 2.1 (removed) | ||
+ | | Cortical filtering and feature detection | ||
+ | | Effort is subsumed by other Core 1 partners (e.g. see MGH/Freesurfer) | ||
+ | |- | ||
+ | | '''Utah''' | ||
+ | | 3.0 (removed) | ||
+ | | Fast implmentations of PDEs | ||
+ | | Real-time filtering is demphasized in favor of shape/DTI analysis | ||
+ | |- | ||
+ | | '''Utah''' | ||
+ | | 2.1-2.3 (added, in place of cortical analysis) | ||
+ | | Shape analysis | ||
+ | | Nonparametric shape analysis added to address needs of core 3. | ||
|- | |- | ||
| '''UNC''' | | '''UNC''' | ||
Line 276: | Line 374: | ||
| '''UNC''' | | '''UNC''' | ||
| 1.4 | | 1.4 | ||
− | | Develop generic cortical correspondence framework | + | | Develop generic cortical correspondence framework (Years 3-5) |
− | | | + | | New |
|- | |- | ||
| '''UNC''' | | '''UNC''' | ||
Line 285: | Line 383: | ||
|- | |- | ||
| '''GaTech''' | | '''GaTech''' | ||
− | | | + | | 2.1 |
− | | | + | | FA analysis |
+ | | New | ||
+ | |- | ||
+ | | '''MGH''' | ||
+ | | 4.1 - 4.4 added | ||
+ | | Group morphometry statistics | ||
| New | | New | ||
+ | |- | ||
|} | |} | ||
== [[Core_1_Timeline_Notes|Core 1 Timeline Notes ]] == | == [[Core_1_Timeline_Notes|Core 1 Timeline Notes ]] == | ||
− | = Core 2 = | + | = Core 2: Engineering = |
== Core 2 Timelines and Milestones == | == Core 2 Timelines and Milestones == | ||
+ | |||
+ | |||
{| border="1" | {| border="1" | ||
Line 319: | Line 425: | ||
| Identify patterns | | Identify patterns | ||
| Yr 3 | | Yr 3 | ||
− | | | + | | Patterns for processing scalar and vector images, models, fiducials complete. Patterns for diffusion weighted imageryand fMRI ongoing. |
|- | |- | ||
| '''GE''' | | '''GE''' | ||
Line 325: | Line 431: | ||
| Create frameworks | | Create frameworks | ||
| Yr 3 | | Yr 3 | ||
− | | | + | | Frameworks for processing scalar and vector images, models, fiducials complete. Frameworks for diffusion weighted imageryand fMRI ongoing. |
|- | |- | ||
| '''GE''' | | '''GE''' | ||
Line 349: | Line 455: | ||
| Refactoring | | Refactoring | ||
| Yr 3 | | Yr 3 | ||
− | | | + | | Complete |
|- | |- | ||
| '''GE''' | | '''GE''' | ||
Line 467: | Line 573: | ||
| '''Isomics''' | | '''Isomics''' | ||
| 2 | | 2 | ||
− | | | + | | Experiment Control Interfaces |
− | | Year 2--- | + | | Year 2---5 |
− | | | + | | Migration from LONI to BatchMake Underway |
|- | |- | ||
| '''Isomics''' | | '''Isomics''' | ||
Line 511: | Line 617: | ||
| Grid enabled algorithms | | Grid enabled algorithms | ||
| Year 3 | | Year 3 | ||
− | | | + | | First version (GWiz alpha) available - initial integration with Slicer3 and execution model. |
|- | |- | ||
| '''UCSD''' | | '''UCSD''' | ||
Line 529: | Line 635: | ||
| Data grid --- slicer access | | Data grid --- slicer access | ||
| Year 2 | | Year 2 | ||
− | | In progress | + | | Completed for version 2.6. In progress for Slicer3 |
|- | |- | ||
| '''UCSD''' | | '''UCSD''' | ||
Line 596: | Line 702: | ||
== [[Core_2_Timeline_Notes|Core 2 Timeline Notes ]] == | == [[Core_2_Timeline_Notes|Core 2 Timeline Notes ]] == | ||
− | = Core 3 = | + | = Core 3: Driving Biological Problems = |
The Core 3 projects submitted R01 style proposals, as specified in the RFA, and did not submit timelines. | The Core 3 projects submitted R01 style proposals, as specified in the RFA, and did not submit timelines. | ||
− | = Core 4 = | + | = Core 4: Service = |
== Core 4 Timelines and Milestones == | == Core 4 Timelines and Milestones == | ||
Line 736: | Line 842: | ||
== [[Core_4_Timeline_Notes|Core 4 Timeline Notes ]] == | == [[Core_4_Timeline_Notes|Core 4 Timeline Notes ]] == | ||
− | = Core 5 = | + | = Core 5: Training = |
== Core 5 Timelines and Milestones == | == Core 5 Timelines and Milestones == | ||
Line 816: | Line 922: | ||
| 4 | | 4 | ||
| Slicer training modules | | Slicer training modules | ||
− | | Yr | + | | Yr 2-5 |
− | | | + | | Many complete for Slicer 2.x, Slicer 3 ongoing |
|- | |- | ||
| '''Harvard''' | | '''Harvard''' | ||
Line 827: | Line 933: | ||
| '''Harvard''' | | '''Harvard''' | ||
| 5 | | 5 | ||
− | | Various workshops and | + | | Various workshops and conferences |
| Yrs 1--5 | | Yrs 1--5 | ||
| On schedule, ongoing (see also link) | | On schedule, ongoing (see also link) | ||
Line 838: | Line 944: | ||
== [[Core_5_Timeline_Notes|Core 5 Timeline Notes ]] == | == [[Core_5_Timeline_Notes|Core 5 Timeline Notes ]] == | ||
− | = Core 6 = | + | = Core 6: Dissemination = |
== Core 6 Timelines and Milestones == | == Core 6 Timelines and Milestones == | ||
Line 907: | Line 1,013: | ||
| Coordinate publication strategies | | Coordinate publication strategies | ||
| Yr 3-5 | | Yr 3-5 | ||
− | | On | + | | On Schedule |
|- | |- | ||
| Isomics | | Isomics | ||
Line 918: | Line 1,024: | ||
| 3.1 | | 3.1 | ||
| On-line repository of NAMIC related publications and presentations | | On-line repository of NAMIC related publications and presentations | ||
− | | Yr 1- | + | | Yr 1-5 |
| On Schedule | | On Schedule | ||
|- | |- | ||
Line 937: | Line 1,043: | ||
| Automated feedback systems that track software downloads | | Automated feedback systems that track software downloads | ||
| Yr 3 | | Yr 3 | ||
− | | | + | | Done |
|} | |} | ||
== Core 6 Timeline Modifications == | == Core 6 Timeline Modifications == | ||
+ | {| border="1" | ||
+ | | '''Group''' | ||
+ | | '''Aim''' | ||
+ | | '''Milestone''' | ||
+ | | '''Modification''' | ||
+ | |- | ||
+ | | Isomics | ||
+ | | 3.1 | ||
+ | | On-line repository of NAMIC related publications and presentations | ||
+ | | Duration of this extended to the full grant cycle. | ||
+ | |} | ||
== [[Core_6_Timeline_Notes|Core 6 Timeline Notes ]] == | == [[Core_6_Timeline_Notes|Core 6 Timeline Notes ]] == | ||
− |
Latest revision as of 13:06, 3 May 2007
Home < 2007 Scientific Report TimelineContents
Introduction
This section of the report gives the milestones for years 1 through 3 that are associated with the timelines in the original proposal. We have organized the milestones by core. For each milestone we have indicated the proposed year of completion and a very brief description of the current status. In some cases the milestones include ongoing work, and we have try to indicate that in the status. We have also included tables that list any significant changes to the proposed timelines. On the wiki page, we have links to the notes from the various PIs that give more details on their progress and the status of the milestones.
These tables demonstrate that the project is, on the whole, proceeding according to the originally planned schedule.
Core 1: Algorithms
Timelines and Milestones
Group | Aim | Milestone | Proposed time of completion | Status |
MIT | 1 | Shape-based segmentation | ||
MIT | 1.1 | Methods to learn shape representations | Year 2 | Completed |
MIT | 1.2 | Shape in atlas-driven segmentation | Year 4 | Completed |
MIT | 1.3 | Validate and refine approach | Year 5 | In Progress |
MIT | 2 | Shape analysis | ||
MIT | 2.1 | Methods to compute statistics of shapes | Year 4 | Completed |
MIT | 2.3 | Validation of shape methods on application data | Year 5 | In progress |
MIT | 3 | Analysis of DTI data | ||
MIT | 3.1 | Fiber geometry | Year 3 | Completed |
MIT | 3.2 | Fiber statistics | Year 5 | Completed, new developments ongoing |
MIT | 3.3 | Validation on real data | Year 5 | Ongoing |
Utah | 1 | Processing of DTI data | ||
Utah | 1.1 | Filtering of DTI | Year 2 | Completed |
Utah | 1.2 | Quantitative analysis of DTI | Year 3 | Completed partially, ongoing |
Utah | 1.3 | Segmentation of cortex/WM | Year 3 | Completed partially, ongoing |
Utah | 1.4 | Segmentation analysis of white matter tracts | Year 3 | Algorithms complete/published, refining and applying to Core 3 data. |
Utah | 2 | Nonparametric Shape Analysis | Year 5 | Incomplete, ongoing. |
Utah | 2.1 | Framework in place | Year 3 | Complete |
Utah | 2.2 | Demonstration on shape of neuranatomy (from Core 3) | Year 4 | Complete |
Utah | 2.3 | Development for multiobject comlexes | Year 4 | Complete |
Utah | 2.4 | Demonstration of NP shape representations on clinical hypotheses from Core 3 | Year 5 | Incomplete, ongoing |
UNC | 1 | Statistical shape analysis | ||
UNC | 1.1 | Comparative anal. of shape anal. schemes | Year 2 | Completed |
UNC | 1.3 | Statistical shape analysis incl. patient variable | Year 5 | Incomplete, ongoing |
UNC | 2 | Structural analysis of DW-MRI | ||
UNC | 2.1 | DTI tractography tools | Year 4 | Completed |
UNC | 2.2 | Geometric characterization of fiber tracts | Year 5 | Completed |
UNC | 2.3 | Quant. anal. of diffusion along fiber tracts | Year 5 | Completed |
GaTech | 1.1 | ITK Implementation of PDEs | Year 2 | Completed |
GaTech | 1.1 | Applications to Core 3 data | Year 4 | Completed |
GaTech | 1.2 | New statistic models | Year 4 | Completed |
GaTech | 1.2 | Shape anaylsis | Year 4 | Preliminary results and ongoing |
GaTech | 2.0 | Integration in to Slicer | Year 4-5 | Preliminary results and ongoing |
MGH | 1 | Registration | ||
MGH | 1.1 | Collect DTI/QBALL data | Year 2 | Completed |
MGH | 1.2 | Develop registration method | Year 2 | Completed |
MGH | 1.3 | Test/optimize registration method | Year 3 | In Progress |
MGH | 1.4 | Apply registration on core 3 data | Year 5 | In Queue |
MGH | 2 | Group DTI Statistics | ||
MGH | 2.1 | Develop group statistic method | Year 2 | Partially Complete |
MGH | 2.2 | Apply on core 3 data | Year 5 | In Queue |
MGH | 3 | Diffusion Segmentation | ||
MGH | 3.1 | Collect DTI/QBALL data | Year 2 | Completed |
MGH | 3.2 | Develop/optimize segmentation algorithm | Year 3 | In Progress |
MGH | 3.3 | Integrate w/ tractography | Year 4 | In Progress |
MGH | 3.4 | Apply on core 3 data | Year 5 | In Queue |
MGH | 4 | Group Morphometry Statistics | ||
MGH | 4.1 | Develop/optimize statistics algorithms | Year 3 | Complete |
MGH | 4.2 | Develop GUI for Linux | Year 3 | Partially Complete |
MGH | 4.3 | Slicer integration | Year 3 | In Queue |
MGH | 4.4 | Compile application on Windows | Year 4 | In Queue |
Timeline Modifications
Group | Aim | Milestone | Modification |
MIT | 2.2 | Methods to compare shape statistics | Removed, the effort refocused on registration necessary for population studies |
MIT | 2.4 | Software infrastructure to integrate shape analysis tools into the pipeline for population studies. | New, partially completed |
MIT | 4 | fMRI analysis including local and atlas-based priors for quantifying activation. | New, partially completed |
Utah | 2.2 (removed) | Feature-based brain image registration. | Shift emphasis to shape-based analysis/registration |
Utah | 2.1 (removed) | Cortical filtering and feature detection | Effort is subsumed by other Core 1 partners (e.g. see MGH/Freesurfer) |
Utah | 3.0 (removed) | Fast implmentations of PDEs | Real-time filtering is demphasized in favor of shape/DTI analysis |
Utah | 2.1-2.3 (added, in place of cortical analysis) | Shape analysis | Nonparametric shape analysis added to address needs of core 3. |
UNC | 1.2 | Develop medially-based shape representation | Remove |
UNC | 1.4 | Develop generic cortical correspondence framework (Years 3-5) | New |
UNC | 2.4 | DTI Atlas Building (Years 2--4) | New |
GaTech | 2.1 | FA analysis | New |
MGH | 4.1 - 4.4 added | Group morphometry statistics | New |
Core 1 Timeline Notes
Core 2: Engineering
Core 2 Timelines and Milestones
Group | Aim | Milestone | Proposed time of completion | Status |
GE | 1 | Define software architecture | ||
GE | 1 | Object design | Yr 1 | Completed |
GE | 1 | Identify patterns | Yr 3 | Patterns for processing scalar and vector images, models, fiducials complete. Patterns for diffusion weighted imageryand fMRI ongoing. |
GE | 1 | Create frameworks | Yr 3 | Frameworks for processing scalar and vector images, models, fiducials complete. Frameworks for diffusion weighted imageryand fMRI ongoing. |
GE | 2 | Software engineering process | ||
GE | 2 | Extreme programming | Yr 1-5 | On schedule, ongoing |
GE | 2 | Process automatiion | Yr 3 | On schedule, ongoing |
GE | 2 | Refactoring | Yr 3 | Complete |
GE | 3 | Automated quality system | ||
GE | 3 | DART deployment | Yr 2 | Complete |
GE | 3 | Persistent testing system | Yr 5 | Incomplete |
GE | 3 | Automatic defect detection | Yr 5 | Incomplete |
Kitware | 1 | Cross-platform development | ||
Kitware | 1 | Deploy environment (CMake, CTest) | Yr 1 | Complete |
Kitware | 1 | DART Integration and testing | Yr 1 | Complete |
Kitware | 1 | Documentation tools | Yr 2 | Complete |
Kitware | 2 | Integration tools | ||
Kitware | 2 | File Formats/IO facilities | Yr 2 | Complete (ongoing) |
Kitware | 2 | CableSWIG deployment | Yr 3 | Complete (integration ongoing) |
Kitware | 2 | Establish XML schema | Yr 4 | Incomplete |
Kitware | 3 | Technology delivery | ||
Kitware | 3 | Deploy applications | Yr 1 | Complete (ongoing) |
Kitware | 3 | Establish plug-in repository | Yr 2 | Incomplete |
Kitware | 3 | Cpack | Yr 4-5 | Incomplete |
Isomics | 1 | NAMIC builds of slicer | Years 2--5 | Complete |
Isomics | 1 | Schizophrenia and DBP intefaces | Year 3---5 | Partially completed, ongoing |
Isomics | 2 | ITK Integration tools | Year 1---3 | Completed |
Isomics | 2 | Experiment Control Interfaces | Year 2---5 | Migration from LONI to BatchMake Underway |
Isomics | 2 | fMRI/DTI algorithm support | Year 2---5 | Completed DTI, fMRI Ongoing |
Isomics | 2 | New DBP algorithm support | Year 2---5 | Ongoing |
Isomics | 3 | Compatible build process | Year 1---3 | Completed |
Isomics | 3 | Dart Integration | Year 1---2 | Completed, upgrades ongoing |
Isomics | 3 | Test scripts for new code | Year 2---5 | Ongoing |
UCSD | 1 | Grid computing---base | Year 1 | Completed |
UCSD | 1 | Grid enabled algorithms | Year 3 | First version (GWiz alpha) available - initial integration with Slicer3 and execution model. |
UCSD | 1 | Testing infrastructure | Year 4 | Initiated |
UCSD | 2 | Data grid --- compatibility | Year 2 | Completed |
UCSD | 2 | Data grid --- slicer access | Year 2 | Completed for version 2.6. In progress for Slicer3 |
UCSD | 3 | Data mediation --- deploy | Year 1 | Incomplete (modfication below) |
UCLA | 1 | Debabeler functionality | Year 1 | Continued Progress |
UCLA | 2 | SLIPIE Interpretation (Layer 1) | Year 1--Year2 | In Progress |
UCLA | 3 | SLIPIE Interpretation (Layer 2) | Year 1--Year2 | On Schedule |
UCLA | 3 | Developing ITK Modules | Year2 | In Progress |
UCLA | 4 | Integrating SRB (GSI-enabled) | Year2 | Completed |
UCLA | 5 | Integrating IDA | Year2 | Completed |
UCLA | 5 | Integrating External Visualization Applications | Year2 | Completed |
Core 2 Timeline Modifications
Group | Aim | Milestone | Modification |
Isomics | 3 | Data mediation | Delayed pending integration of databases into NAMIC infractructure |
Core 2 Timeline Notes
Core 3: Driving Biological Problems
The Core 3 projects submitted R01 style proposals, as specified in the RFA, and did not submit timelines.
Core 4: Service
Core 4 Timelines and Milestones
Group | Aim | Milestone | Proposed time of completion | Status |
Kitware | 1 | Implement Development Farms | ||
Kitware | 1 | Deploy platforms | Yrs 1 | Complete |
Kitware | 1 | Communications | Yrs 1 | Complete, ongoing |
Kitware | 2 | Establish software process | ||
Kitware | 2 | Secure developer database | Yr 1 | Complete, ongoing |
Kitware | 2 | Collect guidelines | Yr 1 | Complete |
Kitware | 2 | Manage software submission process | Yr 1 | Complete |
Kitware | 2 | Configure process tools | Yr 1 | Complete |
Kitware | 2 | Survey community | Yr 1 | Complete |
Kitware | 3 | Deploy NAMIC Tools | ||
Kitware | 3 | Toolkits | Yr 1 | Complete |
Kitware | 3 | Integration tools | Yr 1 | Complete |
Kitware | 3 | Applications | Yr 1 | Complete |
Kitware | 3 | Integrate new computing resources | Yr 1 | Complete |
Kitware | 4 | Provide support | ||
Kitware | 4 | Esablish support infrastructure | Yrs 1--5 | On schedule, ongoing |
Kitware | 4 | NAMIC support | Yr 1 | Complete |
Kitware | 5 | Manage NAMIC Software Releases | Yrs 1--5 | On schedule, ongoing |
Core 4 Timeline Modifications
Group | Aim | Milestone | Modification |
Kitware | 2-5 | Various | Refined/modified the sub aims |
Core 4 Timeline Notes
Core 5: Training
Core 5 Timelines and Milestones
Group | Aim | Milestone | Proposed time of completion | Status |
Harvard | 1 | Formal Training Guidllines | ||
Harvard | 1 | Functional neuroanatomy | Yr 1 | Complete |
Harvard | 1 | Clinical correlations | Yr 1 | Complete |
Harvard | 2 | Mentoring | ||
Harvard | 2 | Programming workshops | Yrs 1-5 | On schedule, ongoing |
Harvard | 2 | One-on-one mentoring, Cores 1, 2, 3 | Yrs 1-5 | On schedule, ongoing |
Harvard | 3 | Collaborative work environment | ||
Harvard | 3 | Wiki | Yrs 1 | Complete |
Harvard | 3 | Mailing lists | Yrs 1 | Complete |
Harvard | 3 | Regular telephone conferences | Yrs 1-5 | On schedule, ongoing |
Harvard | 4 | Educational component for tools | ||
Harvard | 4 | Slicer training modules | Yr 2-5 | Many complete for Slicer 2.x, Slicer 3 ongoing |
Harvard | 5 | Demonstrations and hands-on training | ||
Harvard | 5 | Various workshops and conferences | Yrs 1--5 | On schedule, ongoing (see also link) |
Core 5 Timeline Modifications
None.
Core 5 Timeline Notes
Core 6: Dissemination
Core 6 Timelines and Milestones
Group | Aim | Milestone | Proposed time of completion | Status |
Isomics | 1 | Create a collaboration metholdology for NA-MIC | ||
Isomics | 1.1 | develop a selection process | Yr 1 | Done |
Isomics | 1.2 | guidelines to govern the collaborations | Yr 1-2 | Done |
Isomics | 1.3 | Provide on-site training | Yr 1-5 | On Schedule |
Isomics | 1.4 | develop a web site infrastructure | Yr 1 | Done |
Isomics | 2 | Facilitate communication between NA-MIC developers and wider research community | ||
Isomics | 2.1 | develop materials describing NAMIC technology | Yr 1-5 | On Schedule |
Isomics | 2.2 | participate in scientific meetings | Yr 2-5 | On Schedule |
Isomics | 2.3 | Document interactions with external researchers | Yr 2-5 | On Schedule |
Isomics | 2.4 | Coordinate publication strategies | Yr 3-5 | On Schedule |
Isomics | 3 | Develop a publicly accessible internet resource of data, software, documentation, and publication of new discoveries | ||
Isomics | 3.1 | On-line repository of NAMIC related publications and presentations | Yr 1-5 | On Schedule |
Isomics | 3.2 | On-line repository of NAMIC tutorial and training material | Yr 1-5 | On Schedule |
Isomics | 3.3 | Index and a searchable database | Yr 1-2 | Done |
Isomics | 3.4 | Automated feedback systems that track software downloads | Yr 3 | Done |
Core 6 Timeline Modifications
Group | Aim | Milestone | Modification |
Isomics | 3.1 | On-line repository of NAMIC related publications and presentations | Duration of this extended to the full grant cycle. |