Difference between revisions of "Slicer:Workshops:User Training 101"

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Please install the following software applications and files from the NAMIC site before the course: the current version of the Slicer program appropriate to your platform, the tutorial guide for Slicer, the generic sample data set. This material is located in [[Slicer:Slicer2.6_Getting_Started|Slicer 2.6 Getting Started: Software & Sample Data ]].
 
Please install the following software applications and files from the NAMIC site before the course: the current version of the Slicer program appropriate to your platform, the tutorial guide for Slicer, the generic sample data set. This material is located in [[Slicer:Slicer2.6_Getting_Started|Slicer 2.6 Getting Started: Software & Sample Data ]].
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=Slicer 2 Materials=
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{| border="1"
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|- bgcolor="#ddffff"
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| '''Contents'''
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| '''Presentation'''
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| '''Data'''
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|- bgcolor="#ddffff"
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| '''Slicer'''
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|
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|
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|- bgcolor="#ddffff"
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| Loading and Viewing Data
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|
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[[Media:SlicerTraining1LoadingAndViewingData.ppt|Slicer Training 1 ]]
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|
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[[Media:Tutorial-with-dicom.zip|Dataset Training 1]]
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|- bgcolor="#ddffff"
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| Manual Segmentation and Model Making
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|
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[[Media:Slicer_Segmentation_Tutorial.ppt|Slicer Training 2 ]]
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|
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[[Media:Tutorial-with-dicom.zip|Dataset Training 2]]
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|- bgcolor="#ddffff"
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| Level-Set Segmentation
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|
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[[Media:03-LevelSet.ppt|Slicer Training 3]]
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|
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[[Media:Tutorial-with-dicom.zip|Dataset Training 3]]
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|- bgcolor="#ddffff"
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| Diffusion Tensor Imaging
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|
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[[Media:Slicer_DTMRI_Training4.ppt| Slicer Training 4]]
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|
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[[Media:SlicerSampleDTI.zip| Dataset Training 4.1]] [[Media:Dwi-dicom.zip|Dataset Training 4.2]]
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|- bgcolor="#ddffff"
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| Functional Magnetic Resonance Imaging
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|
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[[Media:SlicerTraining5_fMRI.ppt| Slicer Training 5]]
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|
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[[Media:FMRIData1_short.zip|Dataset Training 5.1]] [[Media:FMRIData2_long.zip|Dataset Training 5.2]]
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|- bgcolor="#ddffff"
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| vtkFreeSurferReaders
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|
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[[Media:SlicerTraining6_vtkFreeSurferReaders.ppt| Slicer Training 6 ]]
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|
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[[Media:FreeSurferSubjects.zip|Dataset Training 6 ]]
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|- bgcolor="#ddffff"
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| Saving Data
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|
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[[Media:SlicerTraining7SavingData.ppt| Slicer Training 7]]
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|
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[[Media:Tutorial-with-dicom.zip|Dataset Training 7]]
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|- bgcolor="#ddffff"
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| Nrrd File Format
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|
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[[Media:SlicerTraining8-NrrdFileFormat.ppt| Slicer Training 8]]
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|
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[[Media:Tensor_data.zip|Dataset Training 8]]
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|- bgcolor="#ddffff"
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| Dicom to Nrrd Conversion
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|
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[[Media:SlicerTraining9_DTI-FromDicomToNrrd.ppt| Slicer Training 9]]
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|
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[[Media:Dwi-dicom.zip|Dataset Training 9]]
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|- bgcolor="#ddffff"
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| EMBrainAtlasClassifier
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|
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[[Media:SlicerAdvancedTraining_EMBrainAtlasClassifier_V1.0.ppt| Slicer Training 10 ]]
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|
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[[Media:BrainAtlasClassifier.zip|Dataset Training 10 ]]
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|- bgcolor="#ddffff"
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| Registration
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|
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[[Media:SlicerAdvancedTraining11_Registration.ppt| Slicer Training 11]]
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[[Media:RegistrationSample.zip|Dataset Training 11 ]]
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|- bgcolor="#ddffff"
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| fMRI Statistical Analysis
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|
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[http://ocw.mit.edu/OcwWeb/Health-Sciences-and-Technology/HST-583Fall-2004/CourseHome/ HST.583 Functional Magnetic Resonance Imaging]
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|
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[http://mgh-edu.nbirn.net/tutorial.html Tutorial documentation]
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|
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<br />
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|}
  
 
= Data to Download =
 
= Data to Download =

Revision as of 13:23, 31 May 2007

Home < Slicer:Workshops:User Training 101

This is the introductory Slicer 2.6 training material.

Introduction

You can begin to learn how to

  • load and view data
  • segment data and create 3D models
  • use the DTI and fMRI modules

For an overview, dowload this slideshow

Software Installation

Please install the following software applications and files from the NAMIC site before the course: the current version of the Slicer program appropriate to your platform, the tutorial guide for Slicer, the generic sample data set. This material is located in Slicer 2.6 Getting Started: Software & Sample Data .

Slicer 2 Materials

Contents Presentation Data
Slicer
Loading and Viewing Data

Slicer Training 1

Dataset Training 1

Manual Segmentation and Model Making

Slicer Training 2

Dataset Training 2

Level-Set Segmentation

Slicer Training 3

Dataset Training 3

Diffusion Tensor Imaging

Slicer Training 4

Dataset Training 4.1 Dataset Training 4.2

Functional Magnetic Resonance Imaging

Slicer Training 5

Dataset Training 5.1 Dataset Training 5.2

vtkFreeSurferReaders

Slicer Training 6

Dataset Training 6

Saving Data

Slicer Training 7

Dataset Training 7

Nrrd File Format

Slicer Training 8

Dataset Training 8

Dicom to Nrrd Conversion

Slicer Training 9

Dataset Training 9

EMBrainAtlasClassifier

Slicer Training 10

Dataset Training 10

Registration

Slicer Training 11

Dataset Training 11

fMRI Statistical Analysis

HST.583 Functional Magnetic Resonance Imaging

Tutorial documentation


Data to Download

Excerpts from the Slicer 101 courses: Diffusion Tensor Imaging fiber tractography (top); fMRI activation map (lower-left); automatic brain segmentation (lower-right).

Slicer Training

For course related questions, please send an e-mail to Sonia Pujol, Ph.D. (spujol at bwh.harvard.edu).

Slicer Additional Resources

A rendering of the Limbic System from the SPL PNL brain atlas


Feedback and Bug reports

Acknowledgements

  • Slicer is being developed by a community of contributors. For more information see the Slicer website.


Back to Training:Main

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