Difference between revisions of "2008 Winter Project Week Tractography"
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**3:15 Dan Marcus to lead discussion of effort required to post this dataset and results on XNAT Central or XNAT NAMIC or what? | **3:15 Dan Marcus to lead discussion of effort required to post this dataset and results on XNAT Central or XNAT NAMIC or what? | ||
**4:00 Guido to lead discussion of "NAMIC software infrastructure for DWI analysis" to clarify what the community expects from a powerful NAMIC DWI Analysis toolkit and identify areas of high priority development. (Ross, CF and Guido to edit this to match today's discussion: excerpt from Guido's email: | **4:00 Guido to lead discussion of "NAMIC software infrastructure for DWI analysis" to clarify what the community expects from a powerful NAMIC DWI Analysis toolkit and identify areas of high priority development. (Ross, CF and Guido to edit this to match today's discussion: excerpt from Guido's email: | ||
| − | - Presentation of current status of Slicer 3 DTI infrastructure | + | - Presentation of current status of Slicer 3 DTI infrastructure (Pieper?) [http://www.na-mic.org/Wiki/index.php/Slicer3:DTMRI] |
- Processing steps necessary for clinical DTI studies | - Processing steps necessary for clinical DTI studies | ||
- Core-1 modules methods a) recently integrated, b) ready to be integrated, c) in development) | - Core-1 modules methods a) recently integrated, b) ready to be integrated, c) in development) | ||
Revision as of 18:39, 18 December 2007
Home < 2008 Winter Project Week Tractography- Tractography Validation Beadeker
- 9:00am: Guido Gerig, Overview of Project goals and progress to date including Santa Fe meeting tractography methods see this page for background
- 9:15am: Randy Gollub, Morphometry BIRN DTI acquisition and analysis update
- 9:25am: Randy Gollub, MIND Reliability dataset goals
- Algorithm specific presentations
- 9:35 Sonia Pujol (BWH) Streamline Tractography in Slicer 2.7 using ROI and Whole Brain Seeding
- 9:45 Sylvain Gouttard (Utah) FiberViewer
- 9:55 Tri Ngo (MIT/BWH) Stochastic Tractography
- 10:05 John Melonakos (Georgia Tech) Geodesic Tractography Segmentation
- 10:15 Vince Magnotta (UIowa) GTract
- 10:25 Ross Whitaker/Tom Fletcher (Utah) Volumetric Connectivity
- 10:35am: Coffee break
- 11:00 Casey Goodlett (Utah) DTI Atlas
- 11:10 Sonia Pujol (BWH) Cross algorithm summary statistics
- Wrap up from data presentations
- 11:25 Ross Whitaker to kick-off discussion of Tractography results with summarizing ideas
- 12:00pm: Lunch
- 1:30- 3:00 Continue discussion of Tractography results with focus on:
- Data formats and coordinate system requirements/guidelines/recommendations
- Quality control methods and implementation
- ROIs: what works, what doesn't, what to do?
- registration &/or resampling to support visit 1- visit 2 analysis and group analysis
- Freesurfer to B0 transform for white matter mask
- quantification of registration error and its propagation forward and impact on final results
- plans for data sharing curation and timeline (integration with XNAT project)
- outcome metrics and how to best frame scientific questions for this project
- 3pm: coffee break
- 3:15 Dan Marcus to lead discussion of effort required to post this dataset and results on XNAT Central or XNAT NAMIC or what?
- 4:00 Guido to lead discussion of "NAMIC software infrastructure for DWI analysis" to clarify what the community expects from a powerful NAMIC DWI Analysis toolkit and identify areas of high priority development. (Ross, CF and Guido to edit this to match today's discussion: excerpt from Guido's email:
- Presentation of current status of Slicer 3 DTI infrastructure (Pieper?) [1] - Processing steps necessary for clinical DTI studies - Core-1 modules methods a) recently integrated, b) ready to be integrated, c) in development)
