Difference between revisions of "2008 Winter Project Week Tractography Meeting Notes"
From NAMIC Wiki
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* Streamline, Fiberviewer (Casey) | * Streamline, Fiberviewer (Casey) | ||
* Streamline, Gtract (Vince) | * Streamline, Gtract (Vince) | ||
| − | * Stochastic, Slicer3 (Tri) | + | * Stochastic, volumetric Slicer3 (Tri) |
* Shortest path, volumetric (John) | * Shortest path, volumetric (John) | ||
* Shortest path, volumetric (Tom) | * Shortest path, volumetric (Tom) | ||
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* Distributions across the tract | * Distributions across the tract | ||
* Atlas (Casey) | * Atlas (Casey) | ||
| + | |||
| + | * Bundle thickness: mix of radius of tract and uncertainty | ||
==Scientific Output== | ==Scientific Output== | ||
Revision as of 17:38, 9 January 2008
Home < 2008 Winter Project Week Tractography Meeting NotesContents
Notes from Presentations and Discussions
Data quality, NAMIC DTI pipeline
- Issues?
- White matter mask?
ROI definitions and impact on different methods
- Force all methods to use the same ROIs?
- Classes of ROIs?
- For streamline methods larger ROIs than the tract itself good
- For shortest path methods, connections stop at ROI
Methods:
- Streamline, Slicer2 (Sonia)
- Streamline, Fiberviewer (Casey)
- Streamline, Gtract (Vince)
- Stochastic, volumetric Slicer3 (Tri)
- Shortest path, volumetric (John)
- Shortest path, volumetric (Tom)
Review and define metrics to compare results, which methods to compare?
Current metrics: tensor invariants (FA, trace, mode, norm), volume, length.
- 12 different tracts
- Tracts voxelized -> volumetric result from tracts
- Missing parts of a tract, how should be penalized?
- Statistics along the tracts, should we sum along the tract to get one measure?
- Distributions across the tract
- Atlas (Casey)
- Bundle thickness: mix of radius of tract and uncertainty
