Difference between revisions of "2008 Summer Project Week:RegionalCorticalThicknessTool"
From NAMIC Wiki
| Line 29: | Line 29: | ||
<h1>Approach, Plan</h1> | <h1>Approach, Plan</h1> | ||
| − | Our plan for the project week is to start the development of a work flow tool allowing regional cortical thickness analysis. | + | Our plan for the project week is to start the development of a work flow tool allowing regional cortical thickness analysis. |
| − | + | Pipeline: | |
| + | - Tissue segmentation: itkEMSCLP UNC external Slicer3 module | ||
| + | - Skull Stripping: in progress (UNC Slicer3 external modules) - ImageMath and SegPostProcess Slicer3 modules | ||
| + | - Lobar parcellation registration | ||
| + | - Atlas to case affine registration: AffineRegistration module | ||
| + | - Atlas to case BSPline registration: Deformable BSpline registration module | ||
| + | - Applying transformation to parcellation map: Resample Volume 2 module | ||
| + | - Cortical Thickness: CortthickCLP (UNC Slicer3 external module) | ||
</div> | </div> | ||
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<h1>Progress</h1> | <h1>Progress</h1> | ||
| − | + | Attended: | |
| + | - Special topic breakout: Non-rigid registration | ||
| + | - Special topic breakout: GWE | ||
Revision as of 13:36, 27 June 2008
Home < 2008 Summer Project Week:RegionalCorticalThicknessTool Return to Project Week Main Page |
Key Investigators
- UNC: Heather Cody Hazlett, Martin Styner, Clement Vachet
- GE: Jim Miller
Objective
We would like to create an end-to-end application within Slicer3 allowing individual and group analysis of regional and local cortical thickness.
Such a workflow applied to the young brain (2-4 years old) is our goal in order to start a longitudinal study of early brain development in autism (UNC DBP).
See our Roadmap for more details.
Approach, Plan
Our plan for the project week is to start the development of a work flow tool allowing regional cortical thickness analysis. Pipeline:
- Tissue segmentation: itkEMSCLP UNC external Slicer3 module - Skull Stripping: in progress (UNC Slicer3 external modules) - ImageMath and SegPostProcess Slicer3 modules - Lobar parcellation registration - Atlas to case affine registration: AffineRegistration module - Atlas to case BSPline registration: Deformable BSpline registration module - Applying transformation to parcellation map: Resample Volume 2 module - Cortical Thickness: CortthickCLP (UNC Slicer3 external module)
Progress
Attended:
- Special topic breakout: Non-rigid registration - Special topic breakout: GWE
