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| − | = NA-MIC Internal Collaborations =
| + | NA-MIC has a variety of offerings for different scientific communities. Given our organization we have three different target audiences for our outreach activities. |
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| − | This is a list of all collaborative projects within NA-MIC. These projects form the basis of the progress reports submitted to the NIH. These collaborations are between team members of the various [[Cores|cores]] of NA-MIC.
| + | = 1. Medical Computer Vision Community = |
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| − | == Diffusion Image Analysis ==
| + | * Value propositions..... |
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| − | === Fiber Tract Extraction and Analysis === | + | = 2. Software Engineers = |
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| − | # [[NA-MIC/Projects/Diffusion_Image_Analysis/Fiber_Tract_Statistics|Fiber Tract Statistics]] (Utah, UNC)
| + | * Value propositions ... |
| − | # [[NA-MIC/Projects/Diffusion_Image_Analysis/Diffusion_measures_alongs_fiber_tracts_of_the_cingulum_bundle|Diffusion measures alongs fiber tracts of the cingulum bundle]] (Harvard, MIT, UNC)
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| − | # [[NA-MIC/Projects/Diffusion_Image_Analysis/Clustering_of_anatomically_distinct_fiber_tracts|Clustering of anatomically distinct fiber tracts]] (Harvard, MIT)
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| − | # [[Algorithm:GATech:Finsler_Active_Contour_DWI|Anisotropic Conformal Metrics for DTI Tractography]] (Georgia Tech, Harvard)
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| − | # [[NA-MIC/Projects/Diffusion_Image_Analysis/Corpus_Callosum_Fiber_Tractography_in_Schizophrenia|Corpus Callosum Fiber Tractography in Schizophrenia]] (Dartmouth, Harvard, MIT)
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| − | === Fractional Anisotropy Analysis === | + | = 3. Neuroscientists = |
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| − | # [[NA-MIC/Projects/Diffusion_Image_Analysis/Corpus_Callosum_Regional_FA_analysis_in_Schizophrenia|Corpus Callosum Regional FA analysis in Schizophrenia]] (Harvard, UNC, Dartmouth)
| + | * Value propositions ... |
| − | # [[NA-MIC/Projects/Diffusion_Image_Analysis/Fractional_Anisotropy_of_the_Corpus_Callosum_and_Anterior_Commissure|Fractional Anisotropy of the Corpus Callosum and Anterior Commissure]] (Harvard, MIT, Dartmouth)
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| − | # [[NA-MIC/Projects/Diffusion_Image_Analysis/Fractional_Anisotrophy_in_the_Uncinate_Fasciculus_in_Schizophrenia_and_Bipolar_I_Disorder--replication_and_extension_of_Kubicki_study|Fractional Anisotrophy in the Uncinate Fasciculus in Schizophrenia and Bipolar I Disorder--replication and extension of Kubicki study]] (Dartmouth, Harvard)
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| − | === Path of Interest Analysis ===
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| − | # [[NA-MIC/Projects/Diffusion_Image_Analysis/Integrity_of_Fronto-Temporal_Circuitry_in_Schizophrenia_using_Path_of_Interest_Analysis|Integrity of Fronto-Temporal Circuitry in Schizophrenia using Path of Interest Analysis]] (Dartmouth, MGH, Isomics, Harvard)
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| − | === Validation ===
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| − | # [[NA-MIC/Projects/Diffusion_Image_Analysis/DTI_Validation|DTI Validation]] (UCI, MGH, UNC, MIT)
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| − | === Algorithm/Software Infrastructure ===
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| − | # [[NA-MIC/Projects/Diffusion_Image_Analysis/DTI_Software_and_Algorithm_Infrastructure|DTI Software/Algorithm Infrastructure]] (Utah, UNC)
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| − | # [[NA-MIC/Projects/Diffusion_Image_Analysis/Tensor_based_statistics|Tensor based statistics]] (Harvard, Utah)
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| − | # [[NA-MIC/Projects/Diffusion_Image_Analysis/Diffusion_tensor_image_filtering|Diffusion tensor image filtering]] (Utah, Harvard)
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| − | # [[NA-MIC/Projects/Diffusion_Image_Analysis/Non-rigid_EPI_Registration|Non-rigid EPI Registration]] (Harvard/MGH, Kitware, Dartmouth)
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| − | # [[NA-MIC/Projects/Diffusion_Image_Analysis/Fiber_Tools_Slicer_Integration|Fiber Tools Integration with Slicer 3]] (UNC, GE, Isomics)
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| − | == Structural Image Analysis ==
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| − | === Image Segmentation ===
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| − | # [[Algorithm:GATech:Knowledge_Based_Bayesian_Segmentation|Knowledge-Based Bayesian Classification and Segmentation]] (Georgia Tech, Kitware)
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| − | # [[NA-MIC/Projects/Structural/Segmentation/Interleaved_Segmentation_and_Registration|Brain Tissue Classification and Subparcellation of Brain Structures]] (Harvard, MIT, Kitware)
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| − | # [[Algorithm:GATech:Rule_Based_Segmentation|Rule based segmentation: Striatum]] (Georgia Tech, Harvard, Isomics, Kitware)
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| − | # [[Algorithm:GATech:Rule_Based_Segmentation|Rule based segmentation: DLPFC]] (Georgia Tech, UCI, Isomics, Kitware)
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| − | # [[Algorithm:GATech:Multiscale_Shape_Segmentation|Multiscale Shape Segmentation Techniques]] (Georgia Tech, Harvard)
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| − | # [[NA-MIC/Projects/Structural/Segmentation/Stochastic_Methods_for_Segmentation|Stochastic Methods for Segmentation]] (Georgia Tech)
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| − | # [[Algorithm:GATech:Statistical_Segmentation_Slicer_2|Statistical/PDE methods for Segmentation]] (Georgia Tech)
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| − | === Image Registration ===
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| − | # [[Algorithm:GATech:Optimal_Mass_Transport_Registration|Optimal Mass Transport for Registration]] (Georgia Tech, Harvard)
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| − | === Morphometric Measures and Shape Analysis ===
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| − | # [[NA-MIC/Projects/Structural/Shape_Analysis/Caudate_and_Corpus_Callosum|Shape Analysis for the caudate and corpus callosum data]] (Harvard, UNC, Georgia Tech, Dartmouth)
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| − | # [[NA-MIC/Projects/Structural/Shape_Analysis/Hippocampus|Shape Analysis of the hippocampus]] (Dartmouth, UNC, Harvard)
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| − | # [[Algorithm:GATech:Multiscale_Shape_Analysis|Multiscale Shape Analysis applied to Caudate and Hippocampus]] (Georgia Tech, Harvard, UNC)
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| − | # [[NA-MIC/Projects/Structural/Shape_Analysis/Using_LONI_Pipeline|UNC Shape Analysis with LONI pipeline for clinical investigators]] (UNC, UCLA)
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| − | # [[NA-MIC/Projects/Structural/Population_Studies|Population Studies]] (UNC, GE)
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| − | # [[NA-MIC/Projects/Structural/Morphometric_Measures/Mild_Cognitive_Impairment|Multi-site morphometry in Mild Cognitive Impairment]] (UCI, mBIRN?)
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| − | # [[NA-MIC/Projects/Structural/Morphometric_Measures/Schizophrenia/Muti-site_Morphometry|Multi-site morphometry in Schizophrenia]] (UCI, FBIRN)
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| − | # [[NA-MIC/Projects/Structural/Shape_Analysis/Automated_shape_model_construction|Automated shape model construction]] (Utah, Harvard)
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| − | # [[NA-MIC/Projects/Structural/Morphometric_Measures/Schizophrenia/Neural_Substrates_of_Apathy|Neural substrates of apathy in schizophrenia]] (Dartmouth, Isomics)
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| − | == fMRI Analysis ==
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| − | === Functional Activation Analysis ===
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| − | # [[NA-MIC/Projects/fMRI_Analysis/Neural_Substrates_of_Working_Memory_in_Schizophrenia:_A_Parametric_3-Back_Study|Neural Substrates of Working Memory in Schizophrenia: A Parametric 3-Back Study]] (Dartmouth, Harvard)
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| − | # [[NA-MIC/Projects/fMRI_Analysis/Brain_Activation_during_a_Continuous_Verbal_Encoding_and_Recognition_Task_in_Schizophrenia|Brain Activation during a Continuous Verbal Encoding and Recognition Task in Schizophrenia]] (Dartmouth, Harvard)
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| − | # [[NA-MIC/Projects/fMRI_Analysis/Fronto-Temporal_Connectivity_in_Schizophrenia_during_Semantic_Memory|Fronto-Temporal Connectivity in Schizophrenia during Semantic Memory]] (Dartmouth, Harvard)
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| − | # [[NA-MIC/Projects/fMRI_Analysis/Imaging_Phenotypes_in_Schizophrenics_and_Controls|Imaging Phenotypes in Schizophrenics and Controls]] (UCI, Toronto)
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| − | # [[NA-MIC/Projects/fMRI_Analysis/Attentional_Circuits_in_Schizophrenia_as_revealed_by_fMRI_and_PET|Attentional Circuits in Schizophrenia as revealed by fMRI and PET]] (UCI)
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| − | === Algorithm and Software Infrastructure ===
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| − | # [[NA-MIC/Projects/fMRI_Analysis/fMRI_Statistics_Software_Infrastructure|fMRI Statistics Software Infrastructure]] (GE, Isomics, Kitware, MIT)
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| − | # [[NA-MIC/Projects/fMRI_Analysis/Spatial_Regularization_for_fMRI_Detection|Spatial Regularization for fMRI Detection]] (MIT, Harvard)
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| − | # [[Algorithm:GATech:Conformal_Flattening_Registration|Conformal Flattening for fMRI Visualization]] (Georgia Tech, Harvard)
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| − | == NA-MIC Kit ==
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| − | === NAMIC Software Process ===
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| − | # [[NA-MIC/Projects/NA-MIC_Kit/CMake_-_NAMIC_Kit_Building|CMake - NAMIC Kit Building]] (Kitware)
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| − | # [[NA-MIC/Projects/NA-MIC_Kit/CPack_-_NAMIC_Kit_Distribution|CPack - NAMIC Kit Distribution]] (Kitware)
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| − | # [[NA-MIC/Projects/NA-MIC_Kit/Dart_2_and_CTest_-_Software_Quality|Dart 2 and CTest - Software Quality]] (GE, Kitware)
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| − | === Software Infrastructure ===
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| − | # [[NA-MIC/Projects/NA-MIC_Kit/Slicer3|Slicer 3]] (Isomics, GE, Kitware, UCSD, UCLA)
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| − | # [[NA-MIC/Projects/NA-MIC_Kit/Coordinate_Systems|Coordinate Systems]] (GE, Isomics)
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| − | # [[NA-MIC/Projects/NA-MIC_Kit/IO_Unification|IO Unification]] (GE, Isomics)
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| − | # [[NA-MIC/Projects/NA-MIC_Kit/Licenses_Unification|Licenses Unification]] (Kitware, Isomics)
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| − | # [[NA-MIC/Projects/NA-MIC_Kit/Grid_Computing|Grid Computing]] (UCSD, UCLA, GE, Kitware, Isomics)
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| − | # [[NA-MIC/Projects/NA-MIC_Kit/KWWidgets|KWWidgets]] (Kitware)
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| − | # [[NA-MIC/Projects/NA-MIC_Kit/Execution_Model|Execution Model]] (GE)
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| − | # [[NA-MIC/Projects/NA-MIC_Kit/MRML|MRML]] (Isomics, Kitware, GE)
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| − | # [[NA-MIC/Projects/NA-MIC_Kit/Teem|Teem]] (Harvard/BWH)
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| − | === Training & Dissemination ===
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| − | # [[NA-MIC/Projects/NA-MIC_Kit/Training_Material_and_Workshops_for_NA-MIC_Kit|Training Material and Workshops for NA-MIC Kit]] (Harvard/MGH, Harvard/BWH)
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| − | # [[NA-MIC/Projects/NA-MIC_Kit/Dissemination|Dissemination for NA-MIC]] (Isomics, Kitware, Harvard)
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| − | == Other Projects ==
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| − | # [[Non_Rigid_Registration|Non-Rigid Registration]]
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| − | = NA-MIC External Collaborations =
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| − | This section describes all external collaborations with NA-MIC. Details for the primary funding mechanism for collaborating with NCBCs are provided [[Collaborator:Resources|here]].
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| − | == PAR-05-063 Automated FE Mesh Development ==
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| − | This project is a NCBC collaboration grant. Collaborators include Nicole Grosland, Vincent Magnotta, Steve Pieper, and Simon Warfield. The master page for this collaboration is [[NA-MIC_NCBC_Collaboration:Automated_FE_Mesh_Development|here]], while the rest of this section contains links to the specific active projects in this collaboration.
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| − | === Meshing Algorithms ===
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| − | # [[Novel_Hexahedral_Meshing_Algorithms|Novel Hexahedral Meshing Algorithms]] (Iowa)
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| − | # [[Hex_vs_Tet_Mesh_Comparisons|Hex vs Tet Mesh Comparisons]] (Iowa/Isomics/BWH)
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| − | === Automated Segmentation ===
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| − | # [[Integration_of_Neural_Network_Algorithms|Integration of Neural Network Algorithms]] (Iowa)
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| − | === Image Registration ===
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| − | # [[Evaluation_of_Inter-Modality_Registration]] (Iowa/Isomics)
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| − | === Validation ===
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| − | # [[Validation_of_Defined_Regions_of_Interest_Using_Surface_Scanning]] (Iowa)
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| − | # [[FE_Mesh_Validation]] (Iowa)
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