Difference between revisions of "SlicerNagoyaJune2009Workshop"

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= Parent Conference =
 
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[http://www.caos-international.org/2009/ CAOS 2009], [http://www.caos-international.org/2009/index.php?tab=4&item=4 Workshop Announcement]
 
  
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== Syllabus ==
 
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The 4 hour course is divided into three sections: an introduction on the concepts of 3D visualization, an experimental hands-on training session using an MR DICOM dataset of the brain and a CT DICOM dataset of the abdomen, and
 
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This workshop provides an introduction for orthopaedic surgeons to the basics of viewing and interacting with DICOM volumes in 3D using the Slicer software.
 
  
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[[Media:CAOS2009_SlicerWorkshop.pdf  | CAOS 2009 Slicer Workshop announcement (pdf) ]] [[Media:CAOS2009_SlicerWorkshop.doc  | (Word)]]
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== Learning Objectives ==
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The learning objectives of the workshop are to understand the basic functions of slicer in the context of image guided therapy, open igt link, programming methods to develop customized interface panel in Slicer.  
  
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== Learning Objectives ==  
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== Pre-requisit ==
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The learning objectives of the workshop are (a) to enhance interpretation of DICOM images through the use of 3D visualization, (b) to gain experience with interactive assessment of complex anatomical structures (c) to present current directions of open-source computer graphics applications in Radiology. After completion of the workshop, participants will be able to visualize and analyze their own datasets within the 3DSlicer platform.  
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The participants are expected to have account in SVN account for Intelligent-SI project.
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Programming environment - Compilation environment for Slicer including appropriate compiler and SVN client.
  
 
== Course Faculty ==
 
== Course Faculty ==
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* Ron Kikinis, M.D., Surgical Planning Laboratory, Harvard Medical School, Department of Radiology, Brigham and Women's Hospital, Boston, MA
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* Nobuhiko Hata, Ph,D, Associate Professor of Radiology, Brigham and Women's Hospital
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* Sonia Pujol, Ph.D., Surgical Planning Laboratory, Harvard Medical School, Department of Radiology, Brigham and Women's Hospital, Boston, MA
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* Kathryn Hayes, M.S.E,Surgical Planning Laboratory, Harvard Medical School, Department of Radiology, Brigham and Women's Hospital, Boston, MA
 
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* Wendy Plesniak, Ph.D., Surgical Planning Laboratory, Harvard Medical School, Department of Radiology, Brigham and Women's Hospital, Boston, MA
 
  
 
== Logistics and Registration ==
 
== Logistics and Registration ==
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*Date: Wednesday June 17, 2009
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*Date: Tuesday June 16, 2009
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*Time: 2 PM - 5:30 PM
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*Time: 10AM - 5:30 PM
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*Location: 1249 Boylston St., Boston MA.
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*Location: Nagoya Institute of Technology
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*[http://www.spl.harvard.edu/pages/Directions#Getting_to_1249_Boylston_Street Directions] The venue is walking distance from the Conference facility. 
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*Participants are required to come with their own computer (PC, Linux or MacOS) with '''a 3D Slicer compiled''' (see below for instruction).
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*Participants are required to come with their own computer (PC, Linux or MacOS).
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*Bring your own lunch and snacks.
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*Attendance is limited to 25 participants. To sign-up for this event, please register on the [http://www.caos-international.org/2009/index.php?tab=4&item=2 CAOS registration website]  with your contact information: name, title, affiliation and address.
 
  
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==Tentative Agenda==   
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== Agenda==   
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** 1:45 PM - 2:00 PM Preliminary session: Software and data installation trouble shooting
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** 11:00 AM - 11:30 AM Noby Hata arrives.
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** 2:00 PM - 2:30 PM Overview of NA-MIC tool-kit and the Slicer 3 platform (Ron Kikinis)
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** 11:30 PM - 12:00 PM Introduction to Slicer in IGT (slide).
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** 2:30 PM - 3:30 PM Hands-on Session 1: 3D Data Loading and Visualization (Sonia Pujol)
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** 12:00 PM - 1:00 PM Lunch on your own. Confirming compilation, SVN co/ci.
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** 3:30 PM - 3:45 PM Coffee-break
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** 1:00 PM - 2:30 PM Surgical Planning (segmentation, model generation, dti, registration)
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** 3:45 PM - 4:30 PM Hands-on Session 2: Data Saving (Sonia Pujol)
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** 3:00 PM - 4:30 PM Open IGT Link, STL model, joint, vtkModel (understanding MRML)
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** 4:30 PM - 5:00 PM Clinical Applications in Orthopaedic Surgery (TBN)
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** 4:30 PM - 6:00 PM Customized GUI, skeleton generator, loadable module
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** 5:00 PM - 5:30 PM Discussion
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** 6:00 PM - 6:30 PM Wrap-up
  
 
= '''Pre-Workshop Preparation''' =
 
= '''Pre-Workshop Preparation''' =

Revision as of 21:50, 9 June 2009

Home < SlicerNagoyaJune2009Workshop

3D Visualization Workshop

Sponsors


Learning Objectives

The learning objectives of the workshop are to understand the basic functions of slicer in the context of image guided therapy, open igt link, programming methods to develop customized interface panel in Slicer.

Pre-requisit

The participants are expected to have account in SVN account for Intelligent-SI project. Programming environment - Compilation environment for Slicer including appropriate compiler and SVN client.

Course Faculty

  • Nobuhiko Hata, Ph,D, Associate Professor of Radiology, Brigham and Women's Hospital


Logistics and Registration

  • Date: Tuesday June 16, 2009
  • Time: 10AM - 5:30 PM
  • Location: Nagoya Institute of Technology
  • Participants are required to come with their own computer (PC, Linux or MacOS) with a 3D Slicer compiled (see below for instruction).
  • Bring your own lunch and snacks.

Agenda

    • 11:00 AM - 11:30 AM Noby Hata arrives.
    • 11:30 PM - 12:00 PM Introduction to Slicer in IGT (slide).
    • 12:00 PM - 1:00 PM Lunch on your own. Confirming compilation, SVN co/ci.
    • 1:00 PM - 2:30 PM Surgical Planning (segmentation, model generation, dti, registration)
    • 3:00 PM - 4:30 PM Open IGT Link, STL model, joint, vtkModel (understanding MRML)
    • 4:30 PM - 6:00 PM Customized GUI, skeleton generator, loadable module
    • 6:00 PM - 6:30 PM Wrap-up

Pre-Workshop Preparation

The workshop is a series of hands-on sessions. Please complete the following tasks in advance of the workshop.

Please allow yourself ample preparation time. Depending on network connection and configuration of your laptop it may take anywhere from 10 to 60 minutes to complete these download and installation tasks.

The following components of the NA-MIC kit will be used during the workshop.

  • 1. Slicer3: software application
  • 2. Datasets: pre-computed MR datasets

Slicer3 Software

Please install the version of Slicer3 appropriate to the platform you'll be working on during the workshop

Recommended configuration: Windows XP, Linux (x86 or x86_64), Mac OS (ppc or Intel), 2 GB of RAM and a dedicated graphic accelerator with 128 MB of on board graphic memory.

Note: Apple Mac OS X

For Mac OS 10.4.10 (Tiger) install X11 from the OS disk 1 (not installed by default on new machines).

For Mac OS 10.5 (Leopard) visit the xquartz website and install xquartz.

Datasets

Please download the following datasets for the hands-on sessions:

Please contact the Slicer Users mailing list for support and questions related to the software.

Back to Events

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