Difference between revisions of "User:Noby"
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*参加希望者はhata@bwh.harvard.eduまで名前、所属、使用パソコンのOSをお送りください。 | *参加希望者はhata@bwh.harvard.eduまで名前、所属、使用パソコンのOSをお送りください。 | ||
| − | == | + | == 講義シラバス == |
===Morning: Introduction to Slicer=== | ===Morning: Introduction to Slicer=== | ||
| − | * 9:00 am - 9:10 am | + | * 9:00 am - 9:10 am インストール確認、サポート |
| − | * 9:10 am - 9:30 am [[Media:Slicer3 Introduction IBMISPS2009 SoniaPujol.pdf | Slicer3 Overview and Applications ]]( | + | * 9:10 am - 9:30 am [[Media:Slicer3 Introduction IBMISPS2009 SoniaPujol.pdf | Slicer3 Overview and Applications ]](Ron Kikinis) |
| − | * 9:30 am - 10:30 am [[Media:Slicer3Course_DataLoadingAndVisualization_IBMISPS2009_SoniaPujol.pdf | Hands-on Session 1: Data Loading and 3D Visualization ]]( | + | * 9:30 am - 10:30 am [[Media:Slicer3Course_DataLoadingAndVisualization_IBMISPS2009_SoniaPujol.pdf | Hands-on Session 1: Data Loading and 3D Visualization ]](波多伸彦) |
* 10:30 am - 10:45 am Coffee-break | * 10:30 am - 10:45 am Coffee-break | ||
| − | * 10:45 am - 11:30 am [[Media:Slicer3Course_DataLoadingAndVisualization_IBMISPS2009_SoniaPujol.pdf | Hands-on Session 2: Data Saving ]]( | + | * 10:45 am - 11:30 am [[Media:Slicer3Course_DataLoadingAndVisualization_IBMISPS2009_SoniaPujol.pdf | Hands-on Session 2: Data Saving ]](山田 篤史) |
* 11:30 am - 12:00 pm Discussion and Conclusion | * 11:30 am - 12:00 pm Discussion and Conclusion | ||
* 12:00 -1pm Lunch Break | * 12:00 -1pm Lunch Break | ||
| Line 35: | Line 35: | ||
*1:00 - 1:30 pm [[media:Slicer-IGT-Overview-IBMSPSAug2009.ppt|'''Introduction: Why Slicer3 for your IGT research? An overview of Slicer3 for IGT.''']] (15 min. O'Donnell) | *1:00 - 1:30 pm [[media:Slicer-IGT-Overview-IBMSPSAug2009.ppt|'''Introduction: Why Slicer3 for your IGT research? An overview of Slicer3 for IGT.''']] (15 min. O'Donnell) | ||
* 1:30 - 4:00 pm [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Neurosurgical-Planning '''Neurosurgical Planning and Guidance by Slicer'''] | * 1:30 - 4:00 pm [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Neurosurgical-Planning '''Neurosurgical Planning and Guidance by Slicer'''] | ||
| − | **Module 1-3 (1:30-2:45 pm) ( | + | **Module 1-3 (1:30-2:45 pm) (徳田淳一) |
# Loading and visualizing anatomical MRI data | # Loading and visualizing anatomical MRI data | ||
# Incorporating fMRI data using image registration and thresholding | # Incorporating fMRI data using image registration and thresholding | ||
# Creating a 3D model of the tumour volume | # Creating a 3D model of the tumour volume | ||
* 2:45 - 3:00 pm Coffee-break | * 2:45 - 3:00 pm Coffee-break | ||
| − | **Module 4-6 (3:00-4:00 pm) ( | + | **Module 4-6 (3:00-4:00 pm) (TBD) |
# Predicting the locations of brain structures using image registration and a brain atlas | # Predicting the locations of brain structures using image registration and a brain atlas | ||
# Incorporating brain fiber tractography from diffusion weighted images | # Incorporating brain fiber tractography from diffusion weighted images | ||
Revision as of 02:57, 9 February 2010
M==Course Title==
Introduction to Opensource Software Slicer and its Application to Image-Guided Therapy
Contents
Course Syllabus
The purpose of this tutorial is to provide the members of the research community with a practical experience of the image processing, 3D visualization, and Image-Guided Therapy capabilities of the Open Source 3D Slicer software platform. The curriculum is hands-on which means that participants are required to attend the workshop with a suitable laptop, preloaded with the software and sample data as specified below. Attendance is limited in order to ensure quality interactions between the faculty and participants.
講師
- 波多伸彦
Surgical Planning Laboratory, Brigham and Women's Hospital, Boston MA
- 徳田淳一
Surgical Planning Laboratory, Brigham and Women's Hospital, Boston MA
Logistics
- 日時：２０１０年３月１６日（火曜日）
- Time: 9am - 4pm
- Location: 東京女子医大
- 参加者は各自のノートブックパソコンにSlicerをダウンロードしてコンパイルできる方に限ります
- 参加希望者はhata@bwh.harvard.eduまで名前、所属、使用パソコンのOSをお送りください。
講義シラバス
Morning: Introduction to Slicer
- 9:00 am - 9:10 am インストール確認、サポート
- 9:10 am - 9:30 am Slicer3 Overview and Applications (Ron Kikinis)
- 9:30 am - 10:30 am Hands-on Session 1: Data Loading and 3D Visualization (波多伸彦)
- 10:30 am - 10:45 am Coffee-break
- 10:45 am - 11:30 am Hands-on Session 2: Data Saving (山田 篤史)
- 11:30 am - 12:00 pm Discussion and Conclusion
- 12:00 -1pm Lunch Break
Afternoon: Introduction to Slicer IGT
- 1:00 - 1:30 pm Introduction: Why Slicer3 for your IGT research? An overview of Slicer3 for IGT. (15 min. O'Donnell)
- 1:30 - 4:00 pm Neurosurgical Planning and Guidance by Slicer
- Module 1-3 (1:30-2:45 pm) (徳田淳一)
- Loading and visualizing anatomical MRI data
- Incorporating fMRI data using image registration and thresholding
- Creating a 3D model of the tumour volume
- 2:45 - 3:00 pm Coffee-break
- Module 4-6 (3:00-4:00 pm) (TBD)
- Predicting the locations of brain structures using image registration and a brain atlas
- Incorporating brain fiber tractography from diffusion weighted images
- Annotating the preoperative plan and saving the scene
参加準備
Please complete the following items prior to the course. Support will be provided as requested
- Software Installation: Please install the newest Slicer3.4 release appropriate to the computer you will be bringing to the workshop:
- Windows: Slicer3-3.4-2009-05-21-win32.exe
- Mac OSX Darwin PPC: Slicer3-3.4.2009-05-21-darwin-ppc.tar.gz
- Mac OSX Darwin Intel: Slicer3-3.4.2009-05-21-darwin-x86.tar.gz
- Linux x86: Slicer3-3.4.2009-05-21-linux-x86.tar.gz
- Linux x86-64: Slicer3-3.4.2009-05-21-linux-x86_64.tar.gz
The instructions for installing the Slicer3 program describe the different steps of the procedure on Mac OS, Linux and Windows.
Recommended configuration: Windows XP, Linux (x86 or x86_64), Mac OS (ppc or Intel), 2 GB of RAM and a dedicated graphic accelerator with 128 MB of on board graphic memory.
- Data to download: Please install the Slicer3VisualizationDataset.
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