CCA:AtlasTools:LabelPage:Sample

Title

NAC CCA Core 2010 MRI Brain Atlas

Description

This file contains the label information that corresponds to the 2010 SPL Brain Atlas.

Credits

Author

Ion-Florin Talos MD

Michael Halle PhD

Institution

Center for Computational Anatomy Core

Neuroimage Analysis Center

Surgical Planning Lab

Brigham and Women's Hospital

Grants

National Institutes of Health (NIH)'s National Center for Research Resources (NCRR), NIH P41 RR13218.

Creation Date

02/16/2009

Imports

Links to other labeltag pages go here. The contents of those pages are imported before the data described on this page.

• external sample lut
• external sample lut (2)

Lookup table information

These tables are just mediawiki tables with a couple of css classes included to make them sortable and declare them as Label Pages.

Generally, the workflow for Label Pages is to import an initial (and possibly large) table using a bulk data converter (say, from a CSV file), then make small edits through the wiki. The label tables can be broken up into smaller tables to make it easier to browse and edit them.

Atlas lookup table

integer_label	text_label	color	notes
2	white matter of left cerebral hemisphere	rgb(245,245,245)
4	left lateral ventricle	rgb(120,18,134)
5	temporal horn of left lateral ventricle	rgb(196,58,250)
7	white matter of cerebellum left	rgb(220,248,164)
8	left cerebellar cortex	rgb(230,148,34)
10	left thalamus	rgb(0,118,14)
11	left caudate nucleus	rgb(122,186,220)
12	left putamen	rgb(236,13,176)
13	left globus pallidus pars externa	rgb(12,48,255)
14	wall of third ventricle	rgb(204,182,142)
15	fourth ventricle	rgb(42,204,164)
17	left hippocampus	rgb(220,216,20)
18	left amygdala	rgb(103,255,255)
24	third ventricle (1)	rgb(60,60,60)
25	left globus pallidus pars interna	rgb(255,165,0)
26	left nucleus accumbens	rgb(165,0,255)
27	left middle cerebellar peduncle	rgb(0,255,127)
28	left hypothalamus	rgb(165,42,42)
34	left superior cerebellar peduncle	rgb(122,135,50)
35	pons	rgb(51,50,135)
40	midbrain	rgb(205,62,78)
41	white matter of right cerebral hemisphere	rgb(0,225,0)
43	right lateral ventricle	rgb(120,18,134)
44	temporal horn of right lateral ventricle	rgb(196,58,250)
46	white matter of cerebellum right	rgb(220,248,164)
47	right cerebellar cortex	rgb(230,148,34)
49	right thalamus	rgb(0,118,14)
50	right caudate nucleus	rgb(122,186,220)
51	right putamen	rgb(236,13,176)
52	right globus pallidus pars externa	rgb(13,48,255)
53	right hippocampus	rgb(220,216,20)
54	right amygdala	rgb(103,255,255)
55	right insula	rgb(80,196,98)
58	right nucleus accumbens	rgb(255,165,0)
60	right hypothalamus	rgb(165,42,42)
61	medulla oblongata	rgb(135,206,235)
63	choroid plexus of right lateral ventricle	rgb(0,200,221)
66	left substantia nigra	rgb(122,135,50)
71	right substantia nigra	rgb(122,135,50)
72	pineal body	rgb(120,190,150)
78	left optic tract	rgb(255,148,10)
79	left red nucleus	rgb(255,148,10)
84	right red nucleus	rgb(255,218,185)
85	optic chiasm	rgb(234,169,30)
96	pellucid septum	rgb(205,10,125)
100	left mammillothalamic tract	rgb(124,140,178)
142	anterior commissure	rgb(221,226,68)
200	right mammillothalamic tract	rgb(0,50,128)
216	right optic tract	rgb(255,204,102)
1000	left insula	rgb(25,5,25)
1001	left superior temporal gyrus (1)	rgb(25,100,40)
1002	left cingulate gyrus (1)	rgb(125,100,160)
1003	left middle frontal gyrus (1)	rgb(100,25,0)
1005	left cuneus	rgb(220,20,100)
1006	left ambiens gyrus	rgb(220,20,10)
1007	left fusiform gyrus	rgb(180,220,140)
1008	left inferior parietal lobule	rgb(220,60,220)
1009	left inferior temporal gyrus	rgb(180,40,120)
1010	left cingulate gyrus (2)	rgb(140,20,140)
1011	left lateral occipital gyrus	rgb(20,30,140)
1012	left orbital gyri	rgb(35,75,50)
1013	left lingual gyrus	rgb(225,140,140)
1014	left straight gyrus	rgb(200,35,75)
1015	left middle temporal gyrus	rgb(160,100,50)
1017	left paracentral lobule	rgb(20,220,60)
1018	opercular part of left inferior frontal gyrus	rgb(60,220,60)
1019	orbital part of left inferior frontal gyrus	rgb(220,180,140)
1020	triangular part of left inferior frontal gyrus	rgb(220,60,20)
1021	left visual cortex	rgb(120,100,60)
1022	left postcentral gyrus	rgb(220,20,20)
1023	left cingulate gyrus (1)	rgb(220,180,220)
1024	left precentral gyrus	rgb(60,20,220)
1025	left precuneus	rgb(160,140,180)
1026	left cingulate gyrus (3)	rgb(80,20,140)
1027	left middle frontal gyrus (2)	rgb(75,50,125)
1028	left superior frontal gyrus (1)	rgb(20,220,160)
1029	left superior parietal lobule and precuneus	rgb(20,180,140)
1030	left superior temporal gyrus	rgb(140,220,220)
1031	left angular and supramarginal gyrus	rgb(80,160,20)
1032	left frontal pole	rgb(100,0,100)
1033	left temporal pole	rgb(70,70,70)
1034	left transverse temporal gyri	rgb(150,150,200)
2001	right superior temporal gyrus (2)	rgb(25,100,40)
2003	right middle frontal gyrus (1)	rgb(100,25,0)
2005	right cuneus	rgb(220,20,100)
2006	right parahippocampal gyrus	rgb(220,20,10)
2007	right fusiform gyrus	rgb(180,220,140)
2008	right angular and supramarginal gyri	rgb(220,60,220)
2009	right inferior temporal gyrus	rgb(180,40,120)
2010	right cingulate gyrus (2)	rgb(140,20,140)
2011	right lateral occipital gyrus	rgb(20,30,140)
2012	right orbital gyri (1)	rgb(35,75,50)
2013	right lingual gyrus	rgb(225,140,140)
2014	right straight gyrus	rgb(200,35,75)
2015	right middle temporal gyrus	rgb(160,100,50)
2017	right paracentral lobule	rgb(60,220,60)
2018	opercular part of right inferior frontal gyrus	rgb(220,180,140)
2019	orbital part of right inferior frontal gyrus	rgb(20,100,50)
2020	triangular part of right inferior frontal gyrus	rgb(220,60,20)
2021	right visual cortex	rgb(120,100,60)
2022	right postcentral gyrus	rgb(220,20,20)
2023	right cingulate gyrus (1)	rgb(220,180,220)
2024	right precentral gyrus	rgb(60,20,220)
2025	right precuneus	rgb(160,140,180)
2027	right middle frontal gyrus (1)	rgb(75,50,125)
2028	right superior frontal gyrus	rgb(20,220,160)
2029	right superior parietal lobule	rgb(20,180,140)
2030	right superior temporal gyrus (3)	rgb(140,220,220)
2031	right supramarginal gyrus	rgb(80,160,20)
2032	right frontal pole	rgb(100,0,100)
2033	right temporal pole	rgb(70,70,70)
2108	right angular and supramarginal gyri	rgb(230,250,230)
3000	right claustrum	rgb(230,250,230)
3001	left claustrum	rgb(230,155,215)
3002	right mamillary body	rgb(130,155,95)
3003	left mamillary body	rgb(155,230,255)
3004	corpus callosum	rgb(135,185,205)
3005	right fornix of forebrain	rgb(35,235,155)
3007	left fornix of forebrain	rgb(75,35,115)
3008	infundibulum of neurohypophysis	rgb(35,195,35)
3011	adenohypophysis	rgb(235,225,115)
3012	neurohypophysis	rgb(220,180,205)

Small addon table

user interface colors

integer_label	text_label	color	notes
0	background	rgb(0,0,0)	The background value is stored here because it isn't anatomical.
10000	bounding box	rgb(255, 128, 128)	This is just a made-up label.
10001	selection	rgb(255, 255, 255)	Also made up.

Output color file

An external script processes this page and produces the following color file, suitable for Slicer.

Pages suitable for generating Slicer color files should be marked with the Category "LabelPageSlicerColorFile".

TODO: Generate this file automatically as part of wiki editing.

#WARNING: This file is automatically generated.
#WARNING: Any edits made to this file may be overwritten.
#
#Filename: CCA_AtlasTools_LabelPage_Sample.txt
#Title: CCA:AtlasTools:LabelPage:Sample
#PageName: CCA:AtlasTools:LabelPage:Sample
#Source: http://www.na-mic.org/Wiki/index.php/CCA:AtlasTools:LabelPage:Sample
#
#Imported page URLs:
# 0: http://www.na-mic.org/Wiki/index.php/CCA:AtlasTools:LabelPage:SampleExternal
# 1: http://www.na-mic.org/Wiki/index.php/CCA:AtlasTools:LabelPage:SampleExternal2
#
#Begin table data:
0 background 0 0 0 255
2 white_matter_of_left_cerebral_hemisphere 245 245 245 255
4 left_lateral_ventricle 120 18 134 255
5 temporal_horn_of_left_lateral_ventricle 196 58 250 255
7 white_matter_of_cerebellum_left 220 248 164 255
8 left_cerebellar_cortex 230 148 34 255
10 left_thalamus 0 118 14 255
11 left_caudate_nucleus 122 186 220 255
12 left_putamen 236 13 176 255
13 left_globus_pallidus_pars_externa 12 48 255 255
14 wall_of_third_ventricle 204 182 142 255
15 fourth_ventricle 42 204 164 255
17 left_hippocampus 220 216 20 255
18 left_amygdala 103 255 255 255
24 third_ventricle_(1) 60 60 60 255
25 left_globus_pallidus_pars_interna 255 165 0 255
26 left_nucleus_accumbens 165 0 255 255
27 left_middle_cerebellar_peduncle 0 255 127 255
28 left_hypothalamus 165 42 42 255
34 left_superior_cerebellar_peduncle 122 135 50 255
35 pons 51 50 135 255
40 midbrain 205 62 78 255
41 white_matter_of_right_cerebral_hemisphere 0 225 0 255
43 right_lateral_ventricle 120 18 134 255
44 temporal_horn_of_right_lateral_ventricle 196 58 250 255
46 white_matter_of_cerebellum_right 220 248 164 255
47 right_cerebellar_cortex 230 148 34 255
49 right_thalamus 0 118 14 255
50 right_caudate_nucleus 122 186 220 255
51 right_putamen 236 13 176 255
52 right_globus_pallidus_pars_externa 13 48 255 255
53 right_hippocampus 220 216 20 255
54 right_amygdala 103 255 255 255
55 right_insula 80 196 98 255
58 right_nucleus_accumbens 255 165 0 255
60 right_hypothalamus 165 42 42 255
61 medulla_oblongata 135 206 235 255
63 choroid_plexus_of_right_lateral_ventricle 0 200 221 255
66 left_substantia_nigra 122 135 50 255
71 right_substantia_nigra 122 135 50 255
72 pineal_body 120 190 150 255
78 left_optic_tract 255 148 10 255
79 left_red_nucleus 255 148 10 255
84 right_red_nucleus 255 218 185 255
85 optic_chiasm 234 169 30 255
96 pellucid_septum 205 10 125 255
100 left_mammillothalamic_tract 124 140 178 255
142 anterior_commissure 221 226 68 255
200 right_mammillothalamic_tract 0 50 128 255
216 right_optic_tract 255 204 102 255
1000 left_insula 25 5 25 255
1001 left_superior_temporal_gyrus_(1) 25 100 40 255
1002 left_cingulate_gyrus_(1) 125 100 160 255
1003 left_middle_frontal_gyrus_(1) 100 25 0 255
1005 left_cuneus 220 20 100 255
1006 left_ambiens_gyrus 220 20 10 255
1007 left_fusiform_gyrus 180 220 140 255
1008 left_inferior_parietal_lobule 220 60 220 255
1009 left_inferior_temporal_gyrus 180 40 120 255
1010 left_cingulate_gyrus_(2) 140 20 140 255
1011 left_lateral_occipital_gyrus 20 30 140 255
1012 left_orbital_gyri 35 75 50 255
1013 left_lingual_gyrus 225 140 140 255
1014 left_straight_gyrus 200 35 75 255
1015 left_middle_temporal_gyrus 160 100 50 255
1017 left_paracentral_lobule 20 220 60 255
1018 opercular_part_of_left_inferior_frontal_gyrus 60 220 60 255
1019 orbital_part_of_left_inferior_frontal_gyrus 220 180 140 255
1020 triangular_part_of_left_inferior_frontal_gyrus 220 60 20 255
1021 left_visual_cortex 120 100 60 255
1022 left_postcentral_gyrus 220 20 20 255
1023 left_cingulate_gyrus_(1) 220 180 220 255
1024 left_precentral_gyrus 60 20 220 255
1025 left_precuneus 160 140 180 255
1026 left_cingulate_gyrus_(3) 80 20 140 255
1027 left_middle_frontal_gyrus_(2) 75 50 125 255
1028 left_superior_frontal_gyrus_(1) 20 220 160 255
1029 left_superior_parietal_lobule_and_precuneus 20 180 140 255
1030 left_superior_temporal_gyrus 140 220 220 255
1031 left_angular_and_supramarginal_gyrus 80 160 20 255
1032 left_frontal_pole 100 0 100 255
1033 left_temporal_pole 70 70 70 255
1034 left_transverse_temporal_gyri 150 150 200 255
2001 right_superior_temporal_gyrus_(2) 25 100 40 255
2003 right_middle_frontal_gyrus_(1) 100 25 0 255
2005 right_cuneus 220 20 100 255
2006 right_parahippocampal_gyrus 220 20 10 255
2007 right_fusiform_gyrus 180 220 140 255
2008 right_angular_and_supramarginal_gyri 220 60 220 255
2009 right_inferior_temporal_gyrus 180 40 120 255
2010 right_cingulate_gyrus_(2) 140 20 140 255
2011 right_lateral_occipital_gyrus 20 30 140 255
2012 right_orbital_gyri_(1) 35 75 50 255
2013 right_lingual_gyrus 225 140 140 255
2014 right_straight_gyrus 200 35 75 255
2015 right_middle_temporal_gyrus 160 100 50 255
2017 right_paracentral_lobule 60 220 60 255
2018 opercular_part_of_right_inferior_frontal_gyrus 220 180 140 255
2019 orbital_part_of_right_inferior_frontal_gyrus 20 100 50 255
2020 triangular_part_of_right_inferior_frontal_gyrus 220 60 20 255
2021 right_visual_cortex 120 100 60 255
2022 right_postcentral_gyrus 220 20 20 255
2023 right_cingulate_gyrus_(1) 220 180 220 255
2024 right_precentral_gyrus 60 20 220 255
2025 right_precuneus 160 140 180 255
2027 right_middle_frontal_gyrus_(1) 75 50 125 255
2028 right_superior_frontal_gyrus 20 220 160 255
2029 right_superior_parietal_lobule 20 180 140 255
2030 right_superior_temporal_gyrus_(3) 140 220 220 255
2031 right_supramarginal_gyrus 80 160 20 255
2032 right_frontal_pole 100 0 100 255
2033 right_temporal_pole 70 70 70 255
2108 right_angular_and_supramarginal_gyri 230 250 230 255
3000 right_claustrum 230 250 230 255
3001 left_claustrum 230 155 215 255
3002 right_mamillary_body 130 155 95 255
3003 left_mamillary_body 155 230 255 255
3004 corpus_callosum 135 185 205 255
3005 right_fornix_of_forebrain 35 235 155 255
3007 left_fornix_of_forebrain 75 35 115 255
3008 infundibulum_of_neurohypophysis 35 195 35 255
3011 adenohypophysis 235 225 115 255
3012 neurohypophysis 220 180 205 255
15000 test_label_15000 0 0 5 255
15001 test_label_15001 255 255 5 255
50000 test_label_50000 0 0 5 255
50001 test_label_50001 255 255 5 255
#EOF