Difference between revisions of "User:Inorton"
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contact: [mailto:inorton@bwhd-tharvardd0tedu inorton @bwh d-t harvard d0t edu] | contact: [mailto:inorton@bwhd-tharvardd0tedu inorton @bwh d-t harvard d0t edu] | ||
| − | + | ==Slicer Notes== | |
Things that aren't fleshed-out enough to go into Mantis, or if I can't fully reproduce yet, can't share the data right now, etc.. | Things that aren't fleshed-out enough to go into Mantis, or if I can't fully reproduce yet, can't share the data right now, etc.. | ||
| − | ==Bugs== | + | ===Bugs=== |
*Can't load high-res MEMPRAGE MRI from MGH for AG case in Slicer3. workaround: loaded fine in slicer2, then saved as nrrd. | *Can't load high-res MEMPRAGE MRI from MGH for AG case in Slicer3. workaround: loaded fine in slicer2, then saved as nrrd. | ||
| − | ==Feature Wishes== | + | ===Feature Wishes=== |
*Better transform handling in the registration code: should sort out any hierarchies for cross-registration (ie, want to register to something that is already inside another transform) | *Better transform handling in the registration code: should sort out any hierarchies for cross-registration (ie, want to register to something that is already inside another transform) | ||
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*Slice intersections in 3D viewer (helps with depth perception). | *Slice intersections in 3D viewer (helps with depth perception). | ||
| − | ==Thoughts== | + | ===Thoughts=== |
*[http://www.slicer.org/slicerWiki/index.php/User:Inorton:Slicer4DTI DTI in Slicer4] | *[http://www.slicer.org/slicerWiki/index.php/User:Inorton:Slicer4DTI DTI in Slicer4] | ||
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*[LoadBrainPointsIntoSlicer] | *[LoadBrainPointsIntoSlicer] | ||
| − | + | ==Slicer4== | |
[[User:inorton:Slicer4CodeNotes]] | [[User:inorton:Slicer4CodeNotes]] | ||
| − | ==Internal Coding== | + | ===Internal Coding=== |
*http://www.slicer.org/slicerWiki/index.php/Slicer4:Developers | *http://www.slicer.org/slicerWiki/index.php/Slicer4:Developers | ||
*http://www.slicer.org/slicerWiki/index.php/Slicer4:QtPort | *http://www.slicer.org/slicerWiki/index.php/Slicer4:QtPort | ||
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*http://www.na-mic.org/Wiki/index.php/QtAugust2010 | *http://www.na-mic.org/Wiki/index.php/QtAugust2010 | ||
| − | ==External links== | + | ===External links=== |
*http://techbase.kde.org/Policies/Binary_Compatibility_Issues_With_C++#Using_a_d-Pointer | *http://techbase.kde.org/Policies/Binary_Compatibility_Issues_With_C++#Using_a_d-Pointer | ||
*http://en.wikipedia.org/wiki/Opaque_pointer | *http://en.wikipedia.org/wiki/Opaque_pointer | ||
| − | + | ==Other Notes== | |
[[User:inorton:Slicer3SuperBuildWindows7|SuperBuilding Slicer3 on Windows 7]] | [[User:inorton:Slicer3SuperBuildWindows7|SuperBuilding Slicer3 on Windows 7]] | ||
Revision as of 04:27, 20 October 2010
Isaiah Norton, Golby Lab, Department of Neurosurgery
contact: inorton @bwh d-t harvard d0t edu
Contents
Slicer Notes
Things that aren't fleshed-out enough to go into Mantis, or if I can't fully reproduce yet, can't share the data right now, etc..
Bugs
- Can't load high-res MEMPRAGE MRI from MGH for AG case in Slicer3. workaround: loaded fine in slicer2, then saved as nrrd.
Feature Wishes
- Better transform handling in the registration code: should sort out any hierarchies for cross-registration (ie, want to register to something that is already inside another transform)
- Put models inside appropriate transform after generation
- Editing volume inside of transform - don't want to have to move volumes out every time to change labelmaps in a complex scene.
- Tract (hyperstreamline) intersection with MR planes (highlighted with color change, ring, etc.)
- Slice intersections in 3D viewer (helps with depth perception).
Thoughts
How-to-do-this
- [LoadBrainPointsIntoSlicer]
Slicer4
Internal Coding
- http://www.slicer.org/slicerWiki/index.php/Slicer4:Developers
- http://www.slicer.org/slicerWiki/index.php/Slicer4:QtPort
- http://www.slicer.org/slicerWiki/index.php/Slicer4:QtPort/Tutorials
- http://www.na-mic.org/Wiki/index.php/QtAugust2010
External links
- http://techbase.kde.org/Policies/Binary_Compatibility_Issues_With_C++#Using_a_d-Pointer
- http://en.wikipedia.org/wiki/Opaque_pointer
Other Notes
SuperBuilding Slicer3 on Windows 7
Slicer3 with WrapITK for Python ITK wrapping
