Difference between revisions of "2011 Winter Project Week: Python and Slicer4"

From NAMIC Wiki
Jump to: navigation, search
Line 54: Line 54:
 
Example [http://viewvc.slicer.org/viewcvs.cgi/trunk/QTScriptedModules/Scripts/LabelStatistics.py?rev=15801&root=Slicer4&view=markup LabelStatistics module source code].
 
Example [http://viewvc.slicer.org/viewcvs.cgi/trunk/QTScriptedModules/Scripts/LabelStatistics.py?rev=15801&root=Slicer4&view=markup LabelStatistics module source code].
  
−
[[image:LabelStatistics-Module-2011-01-09.png|thumb|left|300px|Label Statistics running as a slicer module]].
+
{|
 +
|[[image:LabelStatistics-Module-2011-01-09.png|thumb|300px|Label Statistics running as a slicer module]].
 +
|[[image:LabelStatistics-Slicelet-2011-01-09.png|thumb]300px|Label Statistics running stand-alone as a 'Slicelet']].
 +
|}
 +
Command line to run "Slicelet" from Slicer4 build directory:
  
−
[[image:LabelStatistics-Slicelet-2011-01-09.png|thumb|left]300px|Label Statistics running stand-alone as a 'Slicelet']].
 
−
 
−
Command line to run "Slicelet" from Slicer4 build directory:
 
 
<code>
 
<code>
 
Slicer4 lib/Slicer3/QTScriptedModules/LabelStatistics.py
 
Slicer4 lib/Slicer3/QTScriptedModules/LabelStatistics.py

Revision as of 18:46, 9 January 2011

Home < 2011 Winter Project Week: Python and Slicer4

Key Investigators

  • Jc, Danielle - Kitware
  • Jim - GE
  • Steve - Isomics
  • Demian - BWH

Objective

Develop scripting patterns for implementing workflows in slicer4 to port slicer3 functionality and streamline implementation of new functionality.

Approach, Plan

  • Review initial experiences with PythonQt in slicer4
    • Editor and SWidgets
    • TubeTK-based Interactive PDF Segmenter
    • Endoscopy
  • Consider general architecture for creating module GUIs (scripted widgets)
    • allow adaptive re-use of widgets in different modules such as:
      • embed subset of painting tools inside interactive segmenters
      • embed small model maker interface in segmentation tools
      • embed some annotation (e.g. fiducial) for landmarking in registration
      • embed CLI interfaces in workflow wizards
    • define inheritance for PythonQt implementations to provide consistency across module GUI implementaitons
  • Consider use cases for (scripted) slicer modules - can one implementation pattern cover all use cases?
    • embed GUI in slicer interface (parent is slicer module panel)
    • run as part of a workflow (parent is one step of workflow)
    • run GUI stand-alone (module's widget is top level window)
    • run without GUI (parameters passed on command line CLI-style)

Progress

Slicer4 developer beta supports PythonQt scripted modules.

References

Example LabelStatistics module source code.

Label Statistics running as a slicer module
. 		Label Statistics running stand-alone as a 'Slicelet'.

Command line to run "Slicelet" from Slicer4 build directory:

Slicer4 lib/Slicer3/QTScriptedModules/LabelStatistics.py

Retrieved from "https://www.na-mic.org/w/index.php?title=2011_Winter_Project_Week:_Python_and_Slicer4&oldid=63176"