Difference between revisions of "Events:Computational Methods for Radiation Oncology"

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#Andinet Enquobahrie
 
#Andinet Enquobahrie
 
#Firdaus Janoos
 
#Firdaus Janoos
 +
 +
 +
==Potential Areas of Collaboration==
 +
 +
Possible interrelations
 +
 +
Slicer/NA-MIC has
 +
• Multimodal registration algorithms
 +
• How to put UNC code into the open source world (from BWH experience – third party? Assembla?  Check with Queens/Andras)
 +
•
 +
 +
PLUNC has
 +
• Tolerance and other surface color washes on textured objects
 +
• Endoscopy and 3D MR segmentation: cervix
 +
•
 +
 +
Both want
 +
 +
• Hanging Protocol from Radiology – take bookmarks/scene views from one patient and apply to another
 +
• Shadie/MGRView integration
 +
• AMIGO w/ endoscopy
 +
• AMIGO w/ curved needles
 +
• Meet IHERO standards for communication with Pinnacle/Eclipse
 +
 +
 +
 +
Additional
 +
 +
• ITK needs GPU support
 +
•
 +
 +
 +
 +
 +
 +
 +
Optical CT inclusion
 +
 +
FEM modeling sharings between BWH and UNC
 +
 +
Robotics and device tracking sharing: BWH has device tracking expertise (openIGTLink)
 +
 +
Shadie/MGRView integration
 +
 +
Adding cmake to PLUNC
 +
 +
Problem: how to integrate object-based coordinate systems into object models and integrate UI controls within those coordinate systems?
 +
 +
MGRView w/ ray-cast volume rendering a la volview/vtk
 +
 +
Inclusion of Ontario ARKit/SparKir? (adaptive RT)
 +
 +
What can be taken from PLUNC into Slicer right away?
 +
 +
There needs to be a remodeling of PLUNC licensing to meet the Slicer sharing philosophy
 +
 +
US MR or CT registration brought to RT (Balter putting in a grant on this)
 +
 +
Visualize uncertainty by painting over texture (Pfister/UNC)
 +
 +
Combine Shadie language with MGRView/PLUNC 3Dview capabilities
 +
 +
Image anal and visualization via Slicer (selected modules in use) into PLUNC into MOSAIQ, etc.
 +
 +
 +
 +
 +
 +
•PLUNC Need: Flexibility/refactor?
 +
• Multimodal registration.
 +
 +
•Is there a role for python, numpy?
 +
 +
•Note: WashU CERR has a simple dose engine.
 +
 +
•2d-3d Registration for IGRT using Nanotube Statitionary STomosynthesis  from Siemens, Xinray
 +
 +
•Head and Neck Segmentation by registration and refinement
 +
 +
•Antialiasing algorithm
 +
 +
•How will antialiasing impact DVHs? What is the drift in the dose distribution
 +
 +
•Morphomics Segmentation software for Prostate and Cervix maybe
 +
 +
•James balter collaboration  LA problem
 +
 +
•ITK should have GPU support
 +
 +
 +
 +
•Potential tools from UNC:
 +
–Iterative reconstruction software is shareable
 +
 +
–General GPU tools
 +
 +
•Manual Editing of alignment
 +
 +
•Dose accumulation calculation
 +
 +
•Mechanisms
 +
–Software maintenance R01
 +
 +
–BRP collaborative grant
 +
 +
•Registration of endoscopic images with CT for IGRT: Gyn colposcopy
 +
 +
•Steerable needle planning for gyne brachytherapy
 +
 +
•How to close the loop with feedback for needle insertion and steering for prostate brachy?
 +
 +
Open FEM standard for RT (Balter): How to tie FEMs for creating shape descriptors.

Revision as of 20:16, 5 May 2011

Home < Events:Computational Methods for Radiation Oncology
 Back to Events

Date and Location

Date: Thursday, May 5, 2011

Location: Surgery Education Office, Room CA-034, Carrie Hall, 15 Francis Street. (Directions)

In addition, the following information is useful for first time visitors to the hospital:

Agenda

To brainstorm computational methods for radiation oncology between UNC, NA-MIC, BWH.


  • 8am: Breakfast
  • 8:30-10:30am: UNC -presentations about capabilities of current projects, short term and longer term plans
    • Julian Rosenman PLUNC 18 minutes
    • Gregg Tracton Software for PLUNC, segmentation, registration 10 minutes
    • Stephen Pizer Registration by regression (2 methods), Segmentation via posterior optimization, training probability distributions on s reps and quantile functions, segmentation via correspondence-preserving warps, ant aliasing 23 minutes
    • Sha Chang Nanotube imaging, incl. for IGRT 10 minutes
    • Brandon Frederick Iterative tomographic reconstruction, CTs at treatment time, gpu’s 15 minutes
    • Derek Merck 3D visualization via model-guided rendering, 3D visualization in PLUNC for RTP 15 minutes
    • Ilknur Kabul Texturing of surfaces, onion skins, and cut planes; interpolation of textures 10 minutes
    • Hina Shah Registration of endoscopic cine and CT of throat,fused displays of these two registered sources 8 minutes
    • Ron Alterovitz Planning for brachytherapy with curved needles, FEM software 12 minutes
  • 10:30 am: Break
  • 11:50am-2:30pm NA-MIC/Harvard presentations about capabilities of current projects, short term and longer term plans
    • AMIGO (Tina Kapur) (5 minutes)
    • Slicer3 to Slicer 4, Radiation Therapy support today, and plans for the next year (slides) (Steve Pieper) (30 minutes)
    • SPARKit, Canadian grant for providing open source software platform for radiotherapy, potentially based on NA-MIC Kit (slides) (Andras Lasso) (10minutes)
    • Head and Neck Cancer NA-MIC DBP (slides) (Greg Sharp) (15 minutes)
    • Gynecologic Cancer Brachytherapy Plans (Tina Kapur) (10 minutes)
    • Shadie, shading language for volume visualization (Hanspeter Pfister, Milos Hasan, George Chen, John Wolfgang) (20 minutes)
  • Continue presentations...
  • 2:30pm: Intro of afternoon objectives (Julian Rosenman)
  • 2:45pm: What UNC/Boston system combinations ought to be developed -- the Boston perspective (Tina Kapur)
  • 3pm: What Boston/UNC system combinations ought to be developed -- the UNC perspective (Steve Pizer)
  • 3:30pm: Comments from Kitware about their capabilities relevant to proposed combinations (Brad Davis)
  • 4-5pm
    • Break and subgroup formation (e.g., merging surgical and radiation treatment planning system; 3D visualization software for treatment planning; image analysis software for treatment planning)
    • Subgroups sketch out mechanics for collaborations (http://grants.nih.gov/grants/guide/pa-files/PAR-11-028.html?)
    • Summary: what we do next?

Confirmed Participants

  1. Julian Rosenman
  2. Gregg Tracton
  3. Stephen Pizer
  4. Sha Chang
  5. Brandon Frederick
  6. Derek Merck
  7. Ilknur Kabul
  8. Hina Shah
  9. Ron Alterovitz
  10. Ron Kikinis
  11. Sandy Wells
  12. Steve Pieper
  13. Andras Lasso
  14. Greg Sharp
  15. Tina Kapur
  16. Hanspeter Pfister
  17. Milos Hasan
  18. George Chen
  19. John Wolfgang
  20. Petter Risholm
  21. Andrey Fedorov
  22. James Balter
  23. Brad Davis
  24. Andinet Enquobahrie
  25. Firdaus Janoos


Potential Areas of Collaboration

Possible interrelations

Slicer/NA-MIC has • Multimodal registration algorithms • How to put UNC code into the open source world (from BWH experience – third party? Assembla? Check with Queens/Andras) •

PLUNC has • Tolerance and other surface color washes on textured objects • Endoscopy and 3D MR segmentation: cervix •

Both want

• Hanging Protocol from Radiology – take bookmarks/scene views from one patient and apply to another • Shadie/MGRView integration • AMIGO w/ endoscopy • AMIGO w/ curved needles • Meet IHERO standards for communication with Pinnacle/Eclipse


Additional

• ITK needs GPU support •




Optical CT inclusion

FEM modeling sharings between BWH and UNC

Robotics and device tracking sharing: BWH has device tracking expertise (openIGTLink)

Shadie/MGRView integration

Adding cmake to PLUNC

Problem: how to integrate object-based coordinate systems into object models and integrate UI controls within those coordinate systems?

MGRView w/ ray-cast volume rendering a la volview/vtk

Inclusion of Ontario ARKit/SparKir? (adaptive RT)

What can be taken from PLUNC into Slicer right away?

There needs to be a remodeling of PLUNC licensing to meet the Slicer sharing philosophy

US MR or CT registration brought to RT (Balter putting in a grant on this)

Visualize uncertainty by painting over texture (Pfister/UNC)

Combine Shadie language with MGRView/PLUNC 3Dview capabilities

Image anal and visualization via Slicer (selected modules in use) into PLUNC into MOSAIQ, etc.



•PLUNC Need: Flexibility/refactor? • Multimodal registration.

•Is there a role for python, numpy?

•Note: WashU CERR has a simple dose engine.

•2d-3d Registration for IGRT using Nanotube Statitionary STomosynthesis from Siemens, Xinray

•Head and Neck Segmentation by registration and refinement

•Antialiasing algorithm

•How will antialiasing impact DVHs? What is the drift in the dose distribution

•Morphomics Segmentation software for Prostate and Cervix maybe

•James balter collaboration LA problem

•ITK should have GPU support


•Potential tools from UNC: –Iterative reconstruction software is shareable

–General GPU tools

•Manual Editing of alignment

•Dose accumulation calculation

•Mechanisms –Software maintenance R01

–BRP collaborative grant

•Registration of endoscopic images with CT for IGRT: Gyn colposcopy

•Steerable needle planning for gyne brachytherapy

•How to close the loop with feedback for needle insertion and steering for prostate brachy?

Open FEM standard for RT (Balter): How to tie FEMs for creating shape descriptors.

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