RSNA2011 Planning

Quantitative Imaging Reading Room

Tentative list of demonstrations for the RSNA 2011 Slicer booth. Needs further development and testing Note: RSNA demo machines will need nvidia graphics cards to get GPU Volume Rendering

Nb	DEMO	Datasets	Notes	Tools	Slicer Modules
1	Data Loading and Visualization	Slicer3Visualization Data	Slicer3Visualization Tutorial	Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking (?)	Data, Volumes, Models, Scene Views
2	MRI-based topographic parcellation of human brain	EM Segmenter Data	registration, segmentation EMSegmenter Tasks	EM Segmenter	EMSegmenter
3	Volume Rendering #1 Head	Head CT Scan (Osirix Manix Dataset)	show cropping, transfer functions, GPU, slice composite view, Annotations	Volume Rendering and Annotations	Volume Rendering, Annotations, Scene Views
4	Volume Rendering #2 Abdomen	Abdominal CT scan with AAA (Osirix Panoramix Dataset)	show cropping, transfer functions, GPU, slice composite view, Annotations	Volume Rendering and Annotations	Volume Rendering, Annotations, Scene Views
5	Volume Rendering #3 Thorax	Thoracic CT scan	show cropping, transfer functions, GPU, slice composite view, Annotations	Volume Rendering and Annotations	Volume Rendering, Annotations, Scene Views
6	Traumatic Brain Injury Case Analysis	TBI data (UCLA)	TBI tutorial	ABC Segmentation, Model Maker, Editor, Annotations	Data, ABC Segmentation, Model Maker, Editor, Annotations, Scene Views
7	Radiotherapy	Plastimatch Dose Warping Data (MGH)	Plastimatch Tutorial	Plastimatch, DVH extension (Csaba)	Data, Plastimatch Extension: DICOM/DICOM-RT Import, DICOM/DICOM-RT Export, B-Spine Deformable Registration,XFORMWARP Warping with transform Transforms,
8	White matter exploration for neurosurgical planning	White Matter Exploration dataset	Neurosurgical planning Tutorial	Diffusion ( Estimation, Tractography, Fiducial Seeding), Editor, Model Maker	Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display
9	Longitudinal analysis of meningioma growth (tentative)	Change Tracker Data are part of the tutorial	Change Tracker Tutorial	Change Tracker, Compare Views, Volume Rendering	Change Tracker, Volume Rendering
10	Image-guided prostate interventions	TBD	Pre-op/Intra-op registration; Use Case Demo Prostate Data	Linked Viewing	Annotations, Fast Affine Registration, Fast Rigid Registration, Fast Non Rigid BSpline Registration ?
11	Brain, Abdomen, Knee Atlas	Brain Atlas Knee Atlas Abdominal Atlas	Work in progress - atlases are being updated	Linked Viewing	Data, Volumes, Models, Scene Views

List of Slicer Modules involved in RSNA tutorials & demos

• Data
• Welcome to Slicer
• Volumes
• Models
• Scene Views
• Annotations
• Volume Rendering
• Editor
• Model Maker
• Diffusion Tensor Estimation
• Diffusion Tensor Scalar Measurements
• Tractography Labelmap Seeding
• Tractography Fiducial Seeding
• Tractography Display
• BRAINSTools
• Change Tracker
• Extensions:
  • ABC
  • Plastimatch
  • EMSegmenter
  • Skull Stripper

Slicer4 Punchlist

• Status of
  • brainsfit
  • em segmenter: task simple brain segmentation works as of this morning. Uses only one core for most of the time: Must thread. There is a part that is already parallelized.
  • ctkDICOMwidget
  • skull stripper
  • changetracker
• Documentation: We need all core modules reasonably well documented.
• Download pages: We do not have a lot of time left.
• Volume rendering: Need to review with Julien
• Render performance [1]: This is a big issue
• See the plan in July 2011

Additional Material

(under development)

• File:RSNA2010QIRRPoster.ppt poster FINAL (ppt)
• File:RSNA2010QIRRPoster.pdf poster FINAL (pdf)
• File:RSNA2010QIRR-LoopSlides.ppt Looping slide FINAL (ppt)
• File:RSNA2010QIRR-LoopSlides.pdf Looping slide FINAL (pdf)
• File:RSNA2010QIRRHandout.doc handouts FINAL (doc)
• File:RSNA2010QIRRHandout.pdf handouts FINAL (pdf)

People

• Ron Kikinis (Sunday through Tuesday)
• Sonia Pujol (Saturday through Thursday)
• Samira Farough (Saturday-Friday)
• Andriy Fedorov (Saturday-Friday)
• Steve Pieper (Sunday through Wednesday?)
• Randy Gollub (Sunday-Monday)
• Valerie Humblet (Sunday-Tuesday)
• Kitware (Stephen Aylward ? JC ? Julien ?)

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