Difference between revisions of "2012 Project Week:BatchProcessing"
From NAMIC Wiki
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==Delivery Mechanism== | ==Delivery Mechanism== | ||
| − | Possibly nipype as an extension. | + | * Possibly nipype as an extension. |
| − | + | ** Need to resolve dependencies | |
| + | ** Optionally require users to install independent version of scipy | ||
==Notes== | ==Notes== | ||
Revision as of 15:59, 7 January 2012
Home < 2012 Project Week:BatchProcessing
Key Investigators
- MIT: Satra Ghosh
- Iowa: Hans Johnson
- Kitware: Jean-Christophe Fillion-Robin
- BWH: Andrey Fedorov
- Isomics: Steve Pieper
Various DBP projects and other users have requested the ability to automate large tasks and interoperate with other image analysis tools. Nipype is a solution that is proving useful in this domain so we would like to further refine it as an option to the na-mic community.
Objective
Batch processing with Slicer and Nipype
Approach, Plan
- Work on HD use cases to improve batch processing framework
- Develop example workflows as templates for other projects
- Identify and if possible fix any issues that prevent smooth integration of slicer modules into batch workflows.
Progress
Delivery Mechanism
- Possibly nipype as an extension.
- Need to resolve dependencies
- Optionally require users to install independent version of scipy
