Difference between revisions of "RSNA2012 Planning"
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(Created page with '==Quantitative Imaging Reading Room== Tentative list of demonstrations for the RSNA 2012 Slicer booth. Needs further development and testing '''Note: RSNA demo machines will need…') |
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!Nb !!DEMO !! Datasets !! Notes !! Tools !! Slicer Modules | !Nb !!DEMO !! Datasets !! Notes !! Tools !! Slicer Modules | ||
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− | ||1 ||Data Loading and Visualization || [http://www.slicer.org/slicerWiki/images/6/61/Slicer3VisualizationDataset.zip Slicer3Visualization Data]|| [ | + | ||1 ||Data Loading and Visualization || [http://www.slicer.org/slicerWiki/images/6/61/Slicer3VisualizationDataset.zip Slicer3Visualization Data]|| [http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Training#Slicer4_Data_Loading_and_3D_Visualization | Slicer3Visualization Tutorial]|| Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking (?) || Data, Volumes, Models, Scene Views |
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||2||MRI-based topographic parcellation of human brain || [[Media:RSNA2010_EMS.zip | EM Segmenter Data]] || registration, segmentation [http://www.slicer.org/slicerWiki/index.php/EMSegmenter-Tasks EMSegmenter Tasks] || EM Segmenter || EMSegmenter | ||2||MRI-based topographic parcellation of human brain || [[Media:RSNA2010_EMS.zip | EM Segmenter Data]] || registration, segmentation [http://www.slicer.org/slicerWiki/index.php/EMSegmenter-Tasks EMSegmenter Tasks] || EM Segmenter || EMSegmenter | ||
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||6|| Traumatic Brain Injury Case Analysis || [[Media:TBI-DemoScene-RSNA2011.zip | TBI Demo Data (UCLA)]] || [http://wiki.na-mic.org/Wiki/index.php/File:TBISegmentation_TutorialContestSummer2011.pdf TBI tutorial] || ABC Segmentation, Model Maker, Editor, Annotations || Data, ABC Segmentation, Model Maker, Editor, Annotations, Scene Views | ||6|| Traumatic Brain Injury Case Analysis || [[Media:TBI-DemoScene-RSNA2011.zip | TBI Demo Data (UCLA)]] || [http://wiki.na-mic.org/Wiki/index.php/File:TBISegmentation_TutorialContestSummer2011.pdf TBI tutorial] || ABC Segmentation, Model Maker, Editor, Annotations || Data, ABC Segmentation, Model Maker, Editor, Annotations, Scene Views | ||
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− | ||7|| Radiotherapy || [http://forge.abcd.harvard.edu/gf/download/frsrelease/85/1828/popi-plan.tar.gz Plastimatch Dose Warping Data (MGH)] || [http:// | + | ||7|| Radiotherapy || [http://forge.abcd.harvard.edu/gf/download/frsrelease/85/1828/popi-plan.tar.gz Plastimatch Dose Warping Data (MGH)] || [http://www.na-mic.org/Wiki/index.php/File:PlastimatchDose_TutorialContestSummer2012.pdf Plastimatch Tutorial] || Plastimatch, DVH extension (Csaba) || Data, Plastimatch Extension: DICOM/DICOM-RT Import, DICOM/DICOM-RT Export, B-Spine Deformable Registration,XFORMWARP Warping with transform Transforms, |
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||8|| White matter exploration for neurosurgical planning || [[media:WhiteMatterExplorationData.zip| White Matter Exploration dataset]] || [[media:WhiteMatterExplorationNeurosurgicalPlanning_JHU2011_SoniaPujol.pdf |Neurosurgical planning Tutorial]] || Diffusion ( Estimation, Tractography, Fiducial Seeding), Editor, Model Maker || Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display | ||8|| White matter exploration for neurosurgical planning || [[media:WhiteMatterExplorationData.zip| White Matter Exploration dataset]] || [[media:WhiteMatterExplorationNeurosurgicalPlanning_JHU2011_SoniaPujol.pdf |Neurosurgical planning Tutorial]] || Diffusion ( Estimation, Tractography, Fiducial Seeding), Editor, Model Maker || Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display |
Revision as of 05:43, 20 August 2012
Home < RSNA2012 PlanningQuantitative Imaging Reading Room
Tentative list of demonstrations for the RSNA 2012 Slicer booth. Needs further development and testing Note: RSNA demo machines will need nvidia graphics cards to get GPU Volume Rendering
Nb | DEMO | Datasets | Notes | Tools | Slicer Modules |
---|---|---|---|---|---|
1 | Data Loading and Visualization | Slicer3Visualization Data | Slicer3Visualization Tutorial] | Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking (?) | Data, Volumes, Models, Scene Views |
2 | MRI-based topographic parcellation of human brain | EM Segmenter Data | registration, segmentation EMSegmenter Tasks | EM Segmenter | EMSegmenter |
3 | Volume Rendering #1 Head | Head CT Scan (Osirix Manix Dataset) | show cropping, transfer functions, GPU, slice composite view, Annotations | Volume Rendering and Annotations | Volume Rendering, Annotations, Scene Views |
4 | Volume Rendering #2 Abdomen | Abdominal CT scan with AAA (Osirix Panoramix Dataset) | show cropping, transfer functions, GPU, slice composite view, Annotations | Volume Rendering and Annotations | Volume Rendering, Annotations, Scene Views |
5 | Volume Rendering #3 Thorax | Thoracic CT scan | show cropping, transfer functions, GPU, slice composite view, Annotations | Volume Rendering and Annotations | Volume Rendering, Annotations, Scene Views |
6 | Traumatic Brain Injury Case Analysis | TBI Demo Data (UCLA) | TBI tutorial | ABC Segmentation, Model Maker, Editor, Annotations | Data, ABC Segmentation, Model Maker, Editor, Annotations, Scene Views |
7 | Radiotherapy | Plastimatch Dose Warping Data (MGH) | Plastimatch Tutorial | Plastimatch, DVH extension (Csaba) | Data, Plastimatch Extension: DICOM/DICOM-RT Import, DICOM/DICOM-RT Export, B-Spine Deformable Registration,XFORMWARP Warping with transform Transforms, |
8 | White matter exploration for neurosurgical planning | White Matter Exploration dataset | Neurosurgical planning Tutorial | Diffusion ( Estimation, Tractography, Fiducial Seeding), Editor, Model Maker | Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display |
9 | Longitudinal analysis of meningioma growth | Change Tracker Data are part of the tutorial | Change Tracker Tutorial | Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit | Change Tracker, Volume Rendering, BRAINSFit, CropVolume |
10 | Image-guided prostate interventions | Prostate Data updated for Slicer4, in progress Can load RSNA2010 demo scene, mostly working, see [1] | Pre-op/Intra-op registration; Use Case Demo Prostate Data | Linked Viewing | Annotations, Models, Crosshairs, CompareViews |
11 | Brain Atlas | NAC Multi-modality MRI-based Atlas of the Brain | Work in progress - atlases are being updated | Linked Viewing | Data, Volumes, Models, Scene Views |
12 | Abdomen Atlas | Knee Atlas | Work in progress - atlases are being updated | Linked Viewing | Data, Volumes, Models, Scene Views |
13 | Knee Atlas Atlas | Abdominal Atlas | Work in progress - atlases are being updated | Linked Viewing | Data, Volumes, Models, Scene Views |
List of Slicer Modules involved in RSNA tutorials & demos
- Data
- Welcome to Slicer
- Volumes
- Models
- Scene Views
- Annotations
- Volume Rendering
- Editor
- Model Maker
- Diffusion Tensor Estimation
- Diffusion Tensor Scalar Measurements
- Tractography Labelmap Seeding
- Tractography Fiducial Seeding
- Tractography Display
- BRAINSTools
- Change Tracker
- CropVolume
- Extensions:
- ABC
- Plastimatch
- EMSegmenter
- Skull Stripper
- Documentation: We need all core modules reasonably well documented.