Difference between revisions of "ProstateNavigation workflow"
From NAMIC Wiki
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* Create mockup GUI | * Create mockup GUI | ||
* Try to use existing segmentation modules like [http://www.slicer.org/slicerWiki/index.php/Modules:RobustStatisticsSeg-Documentation-3.6 Robust Statistics Segmenter] or [https://www.youtube.com/watch?v=1mYNwJbE7dQ VolumeClip] for quicker prostate segmentation | * Try to use existing segmentation modules like [http://www.slicer.org/slicerWiki/index.php/Modules:RobustStatisticsSeg-Documentation-3.6 Robust Statistics Segmenter] or [https://www.youtube.com/watch?v=1mYNwJbE7dQ VolumeClip] for quicker prostate segmentation | ||
| − | * Evaluate segmentation results by comparing to manual segmentation of trained radiologists | + | * Evaluate segmentation results (DICE-Coefficient) by comparing to manual segmentation of trained radiologists using [http://www.spl.harvard.edu/publications/item/view/2174 this] dataset |
* Evaluate pre-op to intra-op registration with General Registration (BRAINS) module in Slicer 4.4 using Landmark Registration Error | * Evaluate pre-op to intra-op registration with General Registration (BRAINS) module in Slicer 4.4 using Landmark Registration Error | ||
| + | * in both evaluations | ||
</div> | </div> | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
Revision as of 20:29, 5 January 2015
Home < ProstateNavigation workflow
Key Investigators
Peter Behringer and Andrey Fedorov
Project Description
Objective
- Design an easy to use GUI for ProstateNavigation (Planning, Registration, Navigation)
- Get Ideas how prostate segmentation can be done quicker, fully automatic in best case
- Validate different pre-op to intra-op registration approaches
Approach, Plan
- Create mockup GUI
- Try to use existing segmentation modules like Robust Statistics Segmenter or VolumeClip for quicker prostate segmentation
- Evaluate segmentation results (DICE-Coefficient) by comparing to manual segmentation of trained radiologists using this dataset
- Evaluate pre-op to intra-op registration with General Registration (BRAINS) module in Slicer 4.4 using Landmark Registration Error
- in both evaluations
Progress
- We created a manual describing the workflow steps in the current stage
- Created requirements list containing the core functions of the workflow
