Difference between revisions of "ProstateNavigation workflow"
From NAMIC Wiki
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==Key Investigators== | ==Key Investigators== | ||
| − | Peter | + | Peter Behringer, Andrey Fedorov, Hans Johnson |
==Project Description== | ==Project Description== | ||
Revision as of 15:52, 9 January 2015
Home < ProstateNavigation workflow
Key Investigators
Peter Behringer, Andrey Fedorov, Hans Johnson
Project Description
Objective
- Design an easy to use GUI for ProstateNavigation (Planning, Registration, Navigation)
- Get ideas how prostate segmentation can be done quicker, fully automatic in best case
- Validate different pre-op to intra-op registration approaches
Approach, Plan
- Create mockup GUI
- Try to use existing segmentation modules like Robust Statistics Segmenter or VolumeClip for quicker prostate segmentation
- Evaluate the segmentation results (DICE-Coefficient) by comparing to manual segmentation of trained radiologists using this dataset
- Evaluate pre-op to intra-op registration with General Registration (BRAINS) module in Slicer 4.4
Progress
- Created requirements list containing the core functions of the workflow
- Created draft of the GUI with its necessary components
- Best solution for prostate segmentation seems to be VolumeClip Model (under 15 seconds user interaction time)
- Started evaluation of BSpline registration in BRAINSFit module with masks
