2015 Summer Project Week

Logistics

Location: NH COLLECTION CONSTANZA Hotel, Barcelona

Agenda:

• Sunday, June 21st
  • early evening: project presentations
• Monday June 22
• Tuesday June 23
  • Late afternoon: breakout session on the Open Software Stack
• Wednesday June 24
  • Adjourn at 5pm

Registration Fee: zero. We will cover the charge for the conference room, while all attendees are responsible for their own hotel rooms as well as food.

Agenda

Time	Monday	Tuesday	Wednesday	Thursday	Friday
	Project Presentations	Update Day		IGT Day	Reporting Day
8:30am		Breakfast	Breakfast	Breakfast	Breakfast
9am-12pm		10-11:30am Breakout Session: DICOM (Steve Pieper) Star	11am-12noon Breakout Session: Slicer for users (Ron Kikinis)	9:00-10:30am Tutorial Contest Presentations (Sonia Pujol) Grier Rooms ---------------------------------------- 10am-12pm: Breakout Session: Image-Guided Therapy - Neurosurgery (Alexandra Golby, Tina Kapur) Star	10am-12pm: Project Progress Updates (Stata Building 4th Floor R&D Common Dining Area) ---------------------------------------- 12pm Tutorial Contest Winner Announcement (Stata Building 4th Floor R&D Common Dining Area)
12pm-1pm	Lunch	Lunch	Lunch	Lunch	Lunch boxes; Adjourn by 1:30pm
1pm-5:30pm	1-1:05pm: Ron Kikinis: Welcome Grier Rooms ---------------------------------------- 1:05-3:30pm: Project Introductions (all Project Leads) Grier Rooms ---------------------------------------- 3:30-4:30pm Slicer4 Extensions (Jean-Christophe Fillion-Robin) Grier Room (Left)	1-3pm: Breakout Session: QIICR (Andrey Fedorov) Kiva	1-2:30pm: Breakout Session: Contours (Adam Rankin, Csaba Pinter) Kiva	1-3pm: Breakout Session: Image-Guided Therapy - Prostate Interventions (Clare Tempany, Noby Hata) Star ----------------------------------------
5:30pm	Adjourn for the day	Adjourn for the day	Adjourn for the day	Adjourn for the day

Background

Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded NCBC program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform 3D Slicer, built using VTK, ITK, CMake, and CDash, and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.

Project Week is a semi-annual event which draws 80-120 researchers. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event.

Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.

Several funded projects use the Project Week as a place to convene and collaborate. These include NAC, NCIGT, QIICR, OCAIRO, and NCI Funded Image-Guided Fellowship Program. The next event in this ongoing series will occur in Barcelona, Spain in June 2015.

A summary of all previous Project Events is available here.

This project week is an event endorsed by the MICCAI society.

Please make sure that you are on the na-mic-project-week mailing list

Projects

• Template for project pages

Image-Guided Therapy

• Orthognatic Surgery

Chronic Obstructive Pulmonary Disease, Lung, Chest

• LungCAD (Jayender Jagadeesan)

QIICR

• Integration and testing of new DCMTK with Slicer (Michael Onken, Andrey Fedorov)

Quantitative Radiology

• Texture Analysis for Prostate Imaging

Feature Extraction

• Big Data Medical Image Analysis using Local Features (Matthew Toews, William Wells)

Additional Brain Image Analysis

• pyDBS module update to Slicer4.4 (Sara Fernandez-Vidal, Yulong Zhao, Sonia Pujol)

Infrastructure

• Update Checker
• Integrated Virtual Reality Viewer

Astronomy

• visualization of HI in galaxies (Davide Punzo)

Infrastructure

• Running CLI Modules in the background in MeVisLab (Hans Meine)
• CLI Modules elasticsearch / kibana dashboard (Hans Meine, JC)
• CTK plugins / paths towards interoperability with GUI & interaction (Hans Meine, ??)
• Interoperability tests with "interesting" CLI modules (BRAINSFit, CIP, UKFTractography?) in MeVisLab (/Frontier) (Hans Meine, Steve Pieper)
• Return fiducials from CLIs (Nicole Aucoin, Jim Miller)
• Simplify use of python scripts from the command line (Andrey Fedorov, Steve Pieper, Robin Weiss, Artem Mamonov)

Logistics

• Dates: June 21-24, 2015.
• Location: NH Collection Constanza Hotel, Barcelona, Spain
• REGISTRATION: Please register by adding your name to the list below
• Registration Fee: None
• Hotel: You are welcome to book a room using the CARS 2015 conference services (Click here for form)
• Room sharing: If interested, add your name to the list: here

Registrants

Please add your name to the list. This is the registration mechanism for this project week.

1. Tina Kapur, BWH
2. Ron Kikinis, BWH & Fraunhofer
3. Steve Pieper, Isomics
4. Tamas Ungi (Queen's University, Canada)
5. Andras Lasso, Queen's University, Canada
6. Paolo Zaffino (ImagEngLab, Magna Graecia University, Italy)
7. Salvatore Scaramuzzino (ImagEngLab, Magna Graecia University, Italy)
8. Giampaolo Pileggi (ImagEngLab, Magna Graecia University, Italy)
9. Hans Meine (Fraunhofer MEVIS, Bremen, Germany)
10. Nicole Aucoin (BWH)
11. Sonia Pujol (BWH)
12. Dženan Zukić (Kitware, Carrboro, NC, USA)
13. Jayender Jagadeesan, BWH
14. Guido Gerig (Utah)
15. Sandy Wells, BWH
16. Matthew Toews (École de Technologie Supérieure, Montreal, Canada)
17. Frank Preiswerk, BWH
18. Junichi Tokuda, BWH
19. Jonathan Scalera, BWH
20. Raul San Jose, BWH
21. Jorge Onieva, BWH
22. James Ross, BWH
23. Yulong Zhao, Université de Rennes
24. Laurent Chauvin, BWH
25. Michael Onken, Open Connections
26. Tobias Penzkofer (Department of Radiology, Charité Berlin, Germany)
27. Javier Pascau (Universidad Carlos III de Madrid, Spain)
28. Angel Torrado-Carvajal (Universidad Rey Juan Carlos, Madrid, Spain)
29. Nobuhiko Hata, BWH
30. Robert H. Owen, BK Medical ApS, Denmark
31. Clare Tempany BWH
32. Adam Rankin, Robarts
33. Utsav Pardasani, Robarts
34. Marcelo Romero (Facultad de Ingenieria, Universidad Autonoma del Estado de Mexico, Mexico)
35. J. Jesus Montufar (Facultad de Ingenieria, Universidad Autonoma del Estado de Mexico, Mexico)
36. Davide Punzo (Kapteyn Astronomical Institute, University of Groningen, Netherlands)
37. Andrey Fedorov, BWH
38. Nicolas Rannou, BCH
39. Mikael Brudfors (Universidad Carlos III de Madrid, Spain)
40. Laura Sanz (Universidad Carlos III de Madrid, Spain)
41. Eugenio Marinetto (Universidad Carlos III de Madrid, Spain)
42. David García (Universidad Carlos III de Madrid, Spain)
43. Franklin King (Queen's University / BWH)
44. Jorge García (Universidad Politécnica de Madrid, Spain)