Difference between revisions of "SlicerCMFWorkshop Italy2015"

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==Cranio Maxillo Facial imaging workshop using SlicerCMF ==
  
  
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==Data==
 
==Data==
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEV0M4eWJEeUhrb3c&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 1: Dicom files - They are different from the gipl files]
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[https://drive.google.com/open?id=0B5QjlDZ88CXrR2JCQ3hyWnc4V0U Folder 1: To convert DICOM to GPIL
  
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEQWJzN29BMnR2WW8&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 2: gipl files]
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[https://drive.google.com/open?id=0B5QjlDZ88CXrRkcyTFlNQUN6QkE Folder 2: To do the segmentation]
  
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEYWE4QWRXUk5JNjg&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 3: Scan already approximated]
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[https://drive.google.com/open?id=0B5QjlDZ88CXrRkcyTFlNQUN6QkE Folder 3: To make models]
  
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEOEVFWmVRUVpRQWM&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 4: CB segmentation]
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[https://drive.google.com/open?id=0B5QjlDZ88CXraWd6dktOZ2I2VlE Folder 4: For head orientation]
  
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPESi1pQzVkQWFFckk&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 5: CB registration]
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[https://drive.google.com/open?id=0B5QjlDZ88CXrWFNjNF9tVGlnSGc Folder 5: To apply head orientation matrix to scan]
  
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPESUNRVERaY0JnXzQ&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 5a: segm Max and MD T1]
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[https://drive.google.com/open?id=0B5QjlDZ88CXrTU5vbFBPck9aaTA Folder 6: To approximate manually]
  
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEWEp3ZWhkYTU4MVk&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 6: Models - CB registration]
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[https://drive.google.com/open?id=0B5QjlDZ88CXrZ1ltRzJWMlJFa3M Folder 7: To do voxel based registration]
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[https://drive.google.com/open?id=0B5QjlDZ88CXrX3BDM0tPbEZFOFk Folder 8: To compute colormaps]
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[https://drive.google.com/open?id=0B5QjlDZ88CXrdHJ5MTJfc29EN1U Folder 9: Quantification]
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[https://drive.google.com/open?id=0B5QjlDZ88CXrTzlZWnluU1NTak0 Folder 10: Extra materials]
  
 
[https://www.youtube.com/channel/UCQUtGe5KrpBt2k4mrNeHeUQ/videos DCBIA Videos - Tutorial videos for the image analysis tools]
 
[https://www.youtube.com/channel/UCQUtGe5KrpBt2k4mrNeHeUQ/videos DCBIA Videos - Tutorial videos for the image analysis tools]

Revision as of 20:14, 25 November 2015

Home < SlicerCMFWorkshop Italy2015
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Cranio Maxillo Facial imaging workshop using SlicerCMF

Introduction

This workshop will highlight new developments in publicly available software for image analysis and imaging based research for Dental applications. 3D image analysis continue to mandate a multidisciplinary collaborative team including clinician researchers, software engineers and computer science experts. This hands-on workshop for Cranio Maxillo Facial applications will be using SlicerCMF2.2, a newly released package by DCBIA based in Slicer 4.5.

Date and Location

Tuesday November 23rd , time, at the University -- Italy.

Workshop Content

Presenters

  • Lucia Cevidanes , Ph.D, DDS, University of Michigan

luciacev@umich.edu


Preparation for the workshop

The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers. All participants are required to come with their own laptop computer and install the software and datasets prior to the event. A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory is required. Shared memory graphics boards have significantly poorer performance.

Software

Data

[https://drive.google.com/open?id=0B5QjlDZ88CXrR2JCQ3hyWnc4V0U Folder 1: To convert DICOM to GPIL

Folder 2: To do the segmentation

Folder 3: To make models

Folder 4: For head orientation

Folder 5: To apply head orientation matrix to scan

Folder 6: To approximate manually

Folder 7: To do voxel based registration

Folder 8: To compute colormaps

Folder 9: Quantification

Folder 10: Extra materials

DCBIA Videos - Tutorial videos for the image analysis tools

Other Resources

Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC)

SPHARM-PDM publications in PubMed

Slicer user orientation

Slicer tutorials

Participant List