2017 Winter Project Week/WhiteMatterAnalysis

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  Projects List

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  Left-view Cerebellum

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  Posterior-view Cerebellum

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  Left-view Pars Opercularis

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  Superior-view Pars Opercularis

Key Investigators

• Fan Zhang, BWH
• Shun Gong, BWH
• Isaiah Norton, BWH
• Ye Wu, BWH
• Lauren J. O'Donnell, BWH

Project Description

This project is part of the whitematteranalysis software that provides an automated whole brain tractgoraphy registration and segmentation framework. The aim of this project is to integrate a new Slicer module FiberEndpointAnalysis into the whitematteranalysis pipeline.

Objective	Approach and Plan	Progress and Next Steps
Calculate the overlap of fiber tract (endpoint regions) with anatomical parcellation (e.g. freesurfer) or functional region (e.g. fMRI).	Release the FiberEndPointFromLabelMap module as part of SandBox in SlicerDMRI. Integrate the module into the whitematteranalysis software. Testing and documentation about the new functionality.	Done: Module released in SandBox: https://github.com/SlicerDMRI/Sandbox Done: Integrate EndpointAnalysis into whitematteranalysis: https://github.com/SlicerDMRI/whitematteranalysis Done: Documentation: https://github.com/SlicerDMRI/whitematteranalysis/wiki/Running-the-Clustering-Pipeline#commands-to-do-endpoint-analysis Done: Testing finished.

Background and References

• SlicerDMRI: http://slicerdmri.github.io
• WhiteMatterAnalysis: https://github.com/SlicerDMRI/whitematteranalysis