Difference between revisions of "User:Davisb"
From NAMIC Wiki
Line 7: | Line 7: | ||
===How to build module=== | ===How to build module=== | ||
− | + | *get cvs copy of slicer2 | |
− | + | **Scripts/genlib.tcl | |
− | + | **Scripts/cmaker.tcl | |
− | + | *get svn copy of NAMICSandbox | |
− | + | *create a link to the RuleBasedSegmentation module within slicer2 | |
− | |||
cd slicer2/Modules | cd slicer2/Modules | ||
ln -s NAMICSandbox/RuleBasedSegmentation/vtkRuleBasedSegmentation vtkRuleBasedSegmentation | ln -s NAMICSandbox/RuleBasedSegmentation/vtkRuleBasedSegmentation vtkRuleBasedSegmentation | ||
− | + | *compile slicer2 with RuleBasedSegmentation module | |
− | + | **Scripts/genlib.tcl | |
===How to add tests (under construction)=== | ===How to add tests (under construction)=== |
Revision as of 19:41, 4 May 2007
Contents
Current Projects
Rule Based Segmentation
Status summary
itk tests work, fixed vtk wrapper, added mask code to vtk wrapper, currently debugging mask code
How to build module
- get cvs copy of slicer2
- Scripts/genlib.tcl
- Scripts/cmaker.tcl
- get svn copy of NAMICSandbox
- create a link to the RuleBasedSegmentation module within slicer2
cd slicer2/Modules ln -s NAMICSandbox/RuleBasedSegmentation/vtkRuleBasedSegmentation vtkRuleBasedSegmentation
- compile slicer2 with RuleBasedSegmentation module
- Scripts/genlib.tcl
How to add tests (under construction)
- add tests
- test source is already present in the cxx directory
- update CMakeListsLocal.txt in cxx directory---tests are built in module directory
- added a temporary script RunsTests.sh in the Tests directory to run the itk and vtk tests with and without masks
- copied png images to the Tests directory
- "gold standard" images were incorrect; have been rescaled from [0,1] to [0,255]; so much for gold standard ;)
- Run tests
- itk tests succeed
- vtk test without mask succeeds
- vtk test with mask does not succeed
Problems
- [fixed]Build fails---updated name in cmakelists
- [temporary tests added] need to add tests
- itk test
- vtk test
- [now working] vtk test does not work---subtle error in itk code
- [done] need to add mask
- [the dimensios are itk=3, vtk=3, made itk test 3D also] why does vtk test give warning from diffusion filter, but itk test does not?
- [pending]results from vtk test with mask do not work
- need to check everything in
VTK wrapper does not work
- use VTKITK source from vtkITK directory, not seperate copy of files