Difference between revisions of "Slicer:Workshops:User Training 101 SPujol"
From NAMIC Wiki
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= Introduction = | = Introduction = | ||
This is a training compendium for neuroimage analysis using Slicer2.6. | This is a training compendium for neuroimage analysis using Slicer2.6. | ||
| − | + | This series of course will teach you how to | |
* load and view data | * load and view data | ||
* segment data and create 3D models | * segment data and create 3D models | ||
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* Advanced Training 11: [[Media:SlicerAdvancedTraining11_Registration.ppt|Registration ]] | * Advanced Training 11: [[Media:SlicerAdvancedTraining11_Registration.ppt|Registration ]] | ||
| − | = Training Datasets = | + | = Training Material = |
| + | == Software Tool== | ||
| + | Please follow the [[Slicer:Slicer2.6_Getting_Started|Slicer 2.6 Getting Started]] instructions to install the current version of the Slicer program appropriate to your platform. | ||
| + | == Training Datasets == | ||
* Get these data for Training 1,2,3: [[Media:Tutorial-with-dicom.zip|tutorial_with_dicom.zip]] | * Get these data for Training 1,2,3: [[Media:Tutorial-with-dicom.zip|tutorial_with_dicom.zip]] | ||
* Get these data for Training 4: [[Media:SlicerSampleDTI.zip|SlicerSampleDTI.zip ]] [[Media:Dwi-dicom.zip|dwi-dicom.zip]] | * Get these data for Training 4: [[Media:SlicerSampleDTI.zip|SlicerSampleDTI.zip ]] [[Media:Dwi-dicom.zip|dwi-dicom.zip]] | ||
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* Get these extra set of interoperative data [[Media:Mrt-images.zip| mrt-images.zip]] | * Get these extra set of interoperative data [[Media:Mrt-images.zip| mrt-images.zip]] | ||
* Get these data for EMSegmenter demonstrations: [[Media:EMSegmentTutorial.zip|EMSegmentTutorial.zip]] | * Get these data for EMSegmenter demonstrations: [[Media:EMSegmentTutorial.zip|EMSegmentTutorial.zip]] | ||
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= Slicer Additional Resources = | = Slicer Additional Resources = | ||
Revision as of 10:39, 22 May 2007
Home < Slicer:Workshops:User Training 101 SPujol
Contents
Introduction
This is a training compendium for neuroimage analysis using Slicer2.6. This series of course will teach you how to
- load and view data
- segment data and create 3D models
- perform Diffusion Tensor Imaging and fMRI analysis
For an overview, dowload this slideshow
Training Compendium
For course related questions, please send an e-mail to Sonia Pujol, Ph.D. (spujol at bwh.harvard.edu).
- Training 1: Loading and Viewing Data
- Training 2: Manual Segmentation and Model Making
- Training 3: Level-Set Segmentation
- Training 4: Diffusion Tensor Imaging Analysis
- Training 5: Functional Magnetic Resonance Imaging Analysis
- Training 6: FreeSurferReader
- Training 7: Volume, Model and Scene Saving
- Training 8: Nrrd File Format
- Training 9: Dicom to Nrrd Conversion
- Advanced Training 10: Automatic Segmentation of Brain Structures
- Advanced Training 11: Registration
Training Material
Software Tool
Please follow the Slicer 2.6 Getting Started instructions to install the current version of the Slicer program appropriate to your platform.
Training Datasets
- Get these data for Training 1,2,3: tutorial_with_dicom.zip
- Get these data for Training 4: SlicerSampleDTI.zip dwi-dicom.zip
- Get these data for Training 5: fMRIData_short.zip, fMRIData_long.zip
- Get these data for Training 6: FreeSurferSubjects.zip
- Get these data for Training 7: tutorial_with_dicom.zip
- Get these data for Training 8: TensorData.zip
- Get these data for Training 9: dwi-dicom.zip
- Get these data for Training 10: BrainAtlasClassifier.zip
- Get these data for Training 11: RegistrationSample.zip
- Get these extra set of interoperative data mrt-images.zip
- Get these data for EMSegmenter demonstrations: EMSegmentTutorial.zip
Slicer Additional Resources
- SPL PNL Brain Atlas
- IGT Tutorial Materials
- EMSegmenter for multi-channel data and white matter hyperintensities
- Data Fusion and Registration
- Using 3DSlicer in Astronomy
- How to use Slicer with BIRN
- CT based atlas of the abdomen. This data is organized in analogy to the brain atlas above. The zip archive contains a .txt file with the key for the label values and their anatomical meaning.
Feedback and Bug reports
Acknowledgements
- Slicer is being developed by a community of contributors. For more information see the Slicer website.
Back to Training:Main
