Difference between revisions of "Projects/Diffusion/Contrasting Tractography Measures/Slicer Tractography"
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| − | ====Slicer Tractography==== | + | ====Slicer Tractography: Whole Brain Seeding==== |
Whole brain seeding followed by selection between two ROIs. Using eddy-corrected data set, without downsampling. | Whole brain seeding followed by selection between two ROIs. Using eddy-corrected data set, without downsampling. | ||
Revision as of 14:31, 25 September 2007
Home < Projects < Diffusion < Contrasting Tractography Measures < Slicer TractographySlicer Tractography: Whole Brain Seeding
Whole brain seeding followed by selection between two ROIs. Using eddy-corrected data set, without downsampling.
Tensor estimation in DTMRI module in Slicer 2.8.
Uses automatic brain mask generated in conversion step to prevent tracking in ventricles and outside the brain.
Tracts are seeded at a resolution of 2mm at points where cL > 0.3; tracking stops when cL drops below 0.15.
| Case | Uncinate Fasciculus | Internal Capsule | Fornix | Cingulum (Left) | Cingulum (Right) | Arcuate Fasciculus |
|---|---|---|---|---|---|---|
| caseD00917 | ||||||
| caseD00920 | ||||||
| caseD00924 | ||||||
| caseD00925 | ||||||
| caseD00928 | ||||||
| caseD00935 | ||||||
| caseD00936 | ||||||
| caseD00938 | ||||||
| caseD00939 | ||||||
| caseD00940 |
