Difference between revisions of "NA-MIC/Projects/Collaboration/SBIA UPenn"
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| + | ===References=== | ||
| + | This work was supported in part by NIH grants . | ||
| + | |||
| + | * [http://www.rad.upenn.edu/sbia Link to SBIA web site: ] | ||
| + | * [https://www.rad.upenn.edu/sbia/papers/181.pdf Ragini Verma, Parmeshwar Khurd, Christos Davatzikos, On Analyzing Diffusion Tensor Images by Identifying Manifold Structure using Isomaps, IEEE Transactions on Medical Imaging, 772-778, Vol. 26, No. 6, 2007 (need access to IEEE explore to view papers) ] | ||
| + | * [https://www.rad.upenn.edu/sbia/papers/177.pdf Parmeshwar Khurd, Ragini Verma and Christos Davatzikos, Kernel-based Manifold Learning for Statistical Analysis of Diffusion Tensor Images, Information Processing in Medical Imaging (IPMI), 581-593, Vol. 4584, 2007 ] | ||
| + | * [http://idm.univ-rennes1.fr/VMIP/ressourcesgb.html P. Jannin, C. Grova, C.R. Maurer, Model for defining and reporting reference-based validation protocols in medical image processing, International Journal of Computer Assisted Radiology and Surgery, 1(2), August 2006. ] | ||
| + | * [http://idm.univ-rennes1.fr/VMIP/ressourcesgb.html P. Jannin, M. Fitzpatrick, D. Hawkes, X. Pennec, R. Shahidi, and M.W. Vannier, Editorial: Validation of Medical Image Processing in Image-Guided Therapy, IEEE Transactions on Medical Imaging, 21(11), 2002, pp. 1445-1449. ] | ||
Revision as of 03:43, 18 June 2008
Home < NA-MIC < Projects < Collaboration < SBIA UPenn Return to Project Week Main Page |
Key Investigators
- Ragini Verma, SBIA, UPenn <Ragini.Verma@uphs.upenn.edu>
- Christos Davatzikos <Christos.Davatzikos@uphs.upenn.edu>
- Yang Li <Yang.Li@uphs.upenn.edu>
- Luke Bloy <lbloy@seas.upenn.edu>
Objective
To incorporate into Slicer, processing and analysis methods for DTI and HARDI being developed at the Section of Biomedical Image Analysis (SBIA), UPenn [1]. The main components will be plugins for DTI registration and manifold-based statistics followed by methods for HARDI registration and statistics.
Approach, Plan
- DTI registration: has been developed in SBIA over a period of 2 years, mainly using in-house code (not in ITK). This will be incorporated as a plugin.
- DTI Statistics: SPM-like package for statistics on the full tensor. The proposed format is again a plugin as it is based on code already existing in SBIA in C, C++.
- HARDI registration: This is being developed in ITK, building on HARDI representation format currently under development
- HARDI statistics: being developed in ITK
Progress
- DTI Registration: plugin is ready and will be demonstrated
To do: Replace the affine registration component, help file, speed, version control
- Need help with:
1. General representation for registration in ITK
2. Code for Demons DTI registration for comparison
3. Visualization: tensor glyphs and ODFs
References
This work was supported in part by NIH grants .
- Link to SBIA web site:
- Ragini Verma, Parmeshwar Khurd, Christos Davatzikos, On Analyzing Diffusion Tensor Images by Identifying Manifold Structure using Isomaps, IEEE Transactions on Medical Imaging, 772-778, Vol. 26, No. 6, 2007 (need access to IEEE explore to view papers)
- Parmeshwar Khurd, Ragini Verma and Christos Davatzikos, Kernel-based Manifold Learning for Statistical Analysis of Diffusion Tensor Images, Information Processing in Medical Imaging (IPMI), 581-593, Vol. 4584, 2007
- P. Jannin, C. Grova, C.R. Maurer, Model for defining and reporting reference-based validation protocols in medical image processing, International Journal of Computer Assisted Radiology and Surgery, 1(2), August 2006.
- P. Jannin, M. Fitzpatrick, D. Hawkes, X. Pennec, R. Shahidi, and M.W. Vannier, Editorial: Validation of Medical Image Processing in Image-Guided Therapy, IEEE Transactions on Medical Imaging, 21(11), 2002, pp. 1445-1449.
