Difference between revisions of "Slicer3.2:Training"

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| style="background:#72b291; color:black" align="Center"| '''3.2'''
 
| style="background:#72b291; color:black" align="Center"| '''3.2'''
 
| style="background:#D1FFF9; color:black"| [http://www.spl.harvard.edu/extensions/PubDB/publications/download_bitstream.php?bitstreamid=3732 SPL-PNL  Brain Atlas]
 
| style="background:#D1FFF9; color:black"| [http://www.spl.harvard.edu/extensions/PubDB/publications/download_bitstream.php?bitstreamid=3732 SPL-PNL  Brain Atlas]
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This three-dimensional brain atlas derived from a volumetric, whole-head MRI scan contains the original MRI-scan, a complete set of label maps, three-dimensional reconstructions (200+ structures) and a [http://www.spl.harvard.edu/extensions/PubDB/publications/download_bitstream.php?bitstreamid=3722 tutorial]. See [http://www.spl.harvard.edu/pages/Special:PubDB_View?dspaceid=1265 '''here'''] for background info.
+
This three-dimensional brain atlas derived from a volumetric, whole-head MRI scan contains the original MRI-scan, a complete set of label maps, three-dimensional reconstructions (200+ structures) and a [http://www.spl.harvard.edu/extensions/PubDB/publications/download_bitstream.php?bitstreamid=3722 tutorial]. See [http://www.spl.harvard.edu/pages/Special:PubDB_View?dspaceid=1265 '''here'''] for more background info.
 
| style="background:#D1FFF9; color:black"|[http://www.spl.harvard.edu/extensions/PubDB/publications/download_bitstream.php?bitstreamid=3732 SPL-PNL  Brain Atlas]
 
| style="background:#D1FFF9; color:black"|[http://www.spl.harvard.edu/extensions/PubDB/publications/download_bitstream.php?bitstreamid=3732 SPL-PNL  Brain Atlas]
 
| style="background:#C3D1C3; color:black" align="Center"| [[Image:Atlas.png|100px|Brain Atlas]]
 
| style="background:#C3D1C3; color:black" align="Center"| [[Image:Atlas.png|100px|Brain Atlas]]
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| style="background:#72b291; color:black" align="Center"| '''3.3'''
 
| style="background:#72b291; color:black" align="Center"| '''3.3'''
 
| style="background:#D1FFF9; color:black"| [http://www.spl.harvard.edu/extensions/PubDB/publications/download_bitstream.php?bitstreamid=3731 SPL Abdominal Atlas]
 
| style="background:#D1FFF9; color:black"| [http://www.spl.harvard.edu/extensions/PubDB/publications/download_bitstream.php?bitstreamid=3731 SPL Abdominal Atlas]
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This three-dimensional abdominal atlas was derived from a computed tomography (CT) scan, using semi-automated image segmentation and three-dimensional reconstruction techniques. The dataset contains the original CT scan, detailed label maps, three-dimensional reconstructions and a [http://www.spl.harvard.edu/extensions/PubDB/publications/download_bitstream.php?bitstreamid=3729 tutorial]. See [http://www.spl.harvard.edu/pages/Special:PubDB_View?dspaceid=1266 '''here'''] for background info.
+
This three-dimensional abdominal atlas was derived from a computed tomography (CT) scan, using semi-automated image segmentation and three-dimensional reconstruction techniques. The dataset contains the original CT scan, detailed label maps, three-dimensional reconstructions and a [http://www.spl.harvard.edu/extensions/PubDB/publications/download_bitstream.php?bitstreamid=3729 tutorial]. See [http://www.spl.harvard.edu/pages/Special:PubDB_View?dspaceid=1266 '''here'''] for more background info.
 
| style="background:#D1FFF9; color:black"|[http://www.spl.harvard.edu/extensions/PubDB/publications/download_bitstream.php?bitstreamid=3731 SPL Abdominal Atlas]
 
| style="background:#D1FFF9; color:black"|[http://www.spl.harvard.edu/extensions/PubDB/publications/download_bitstream.php?bitstreamid=3731 SPL Abdominal Atlas]
 
| style="background:#C3D1C3; color:black" align="Center"| [[Image:Abdominal-Atlas-3Dsnapshot.png|100px|Abdominal Atlas]]
 
| style="background:#C3D1C3; color:black" align="Center"| [[Image:Abdominal-Atlas-3Dsnapshot.png|100px|Abdominal Atlas]]

Revision as of 19:26, 1 July 2008

Home < Slicer3.2:Training

Welcome to the 3D Slicer3 Tutorial Page

This page is under construction The information on this page applies to 3D Slicer version 3. If you are looking for materials about Slicer version 2, please go to the following location.

  • Slicer 3 has been designed as
    • an easy-to-use application for 3D image analysis and visualization,
    • an open-source environment for software development,
    • a technology delivery platform for community breakthroughs.
  • Slicer3 is distributed under a BSD open source license, and is designed to enable a collaborative development environment.
  • This page contains training materials and data sets for self-guided training in the use of Slicer3
  • For questions about the materials on this page, please send an e-mail to Sonia Pujol, Ph.D. (spujol at bwh.harvard.edu).
 Slicer Logo
Slicer logo

Software Installation

The Slicer download page contains links for downloading the different versions of Slicer 3.

Training Compendium

Category/# Tutorial Sample Data Image
1.1 Data Loading and Visualization in Slicer3 SlicerSampleVisualization.tar.gz LoadingandVisualization
1.2 EM Segmentation Course
Older materials: 1, 2 		AutomaticSegmentation.tar.gz
Older Materials: 1 		EM Segmenter
1.3 Affine and deformable registration in Slicer 3 SlicerSampleRegistration.tgz SlicerRegistration
1.4 Processing of DWI and DTI data in Slicer3 earlier version

This tutorial takes the trainee through the slicer3 diffusion display and processing options. See here for background info.

Slicer3-diffusion-Tutorial material.zip Glyphs and tracts
2.1 Plug-ins for Slicer3: Course for Developers

This tutorial is intended for engineers and scientists who want to integrate external programs with Slicer3.

HelloWorld.zip Plug-In
2.2 Image Guided Therapy Planning Tutorial

See here for background info. This tutorial takes the trainee through a complete workup for neurosurgical patient specific mapping

NeurosurgicalPlanningTutorialData.zip Neurosurgical Planning Overview
3.1 Slicer3 as a research tool for image guided therapy research (IGT)

This tutorial is intended for engineers and scientists who want to use Slicer 3 for IGT research.

Slicer with robots
3.2 SPL-PNL Brain Atlas

This three-dimensional brain atlas derived from a volumetric, whole-head MRI scan contains the original MRI-scan, a complete set of label maps, three-dimensional reconstructions (200+ structures) and a tutorial. See here for more background info.

SPL-PNL Brain Atlas Brain Atlas
3.3 SPL Abdominal Atlas

This three-dimensional abdominal atlas was derived from a computed tomography (CT) scan, using semi-automated image segmentation and three-dimensional reconstruction techniques. The dataset contains the original CT scan, detailed label maps, three-dimensional reconstructions and a tutorial. See here for more background info.

SPL Abdominal Atlas Abdominal Atlas
  • Category 1 = Basic functionality
  • Category 2 = Advanced functionality
  • Category 3 = Specialized application packages

Additional Materials

For a variety of data sets for downloading, check the following link.
Back to Training:Main

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