Difference between revisions of "2009 Winter Project Week Tumor Microenvironment"
From NAMIC Wiki
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<h1>Objective</h1> | <h1>Objective</h1> | ||
| − | To implement a microscopy image analysis pipeline in Slicer3, specifically tailored for characterizing the tumor microenvironment as observed in the murine breast tumors. | + | To implement a microscopy image analysis pipeline in Slicer3, specifically tailored for characterizing the tumor microenvironment as observed in the murine breast tumors. The goal will be to validate the theories shown as schematic from [Vargo-Gogola 2007] (rightmost image). |
| − | |||
</div> | </div> | ||
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Integrate existing segmentation, validation and labeling pipelines into the Slicer3 framework. | Integrate existing segmentation, validation and labeling pipelines into the Slicer3 framework. | ||
| − | Begin with level set methods of Mosaliganti | + | Begin with level set methods of [Mosaliganti 2007] (middle image). Then the tessellation based method of the same authors, time permitting. Explore what can be obtained with EMSegement of Slicer3. Compare and contrast all sets of results. |
| − | Explore what can be obtained with EMSegement of Slicer3. Compare and contrast all sets of results. | + | Also, explore labeling capabilities of Slicer3. |
| − | Also, explore | ||
</div> | </div> | ||
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<h1>Progress</h1> | <h1>Progress</h1> | ||
| − | Updated every day. | + | Updated every day of Project Week. |
Revision as of 17:04, 5 January 2009
Home < 2009 Winter Project Week Tumor Microenvironment Return to 2008_Winter_Project_Week |
Key Investigators
- The Ohio State University: Shantanu Singh, Raghu Machiraju
- GE Global Research: Jens Rittscher
- BWH: Michael Halle, Steve Pieper, Wendy Plesniak
Objective
To implement a microscopy image analysis pipeline in Slicer3, specifically tailored for characterizing the tumor microenvironment as observed in the murine breast tumors. The goal will be to validate the theories shown as schematic from [Vargo-Gogola 2007] (rightmost image).
Approach, Plan
Integrate existing segmentation, validation and labeling pipelines into the Slicer3 framework. Begin with level set methods of [Mosaliganti 2007] (middle image). Then the tessellation based method of the same authors, time permitting. Explore what can be obtained with EMSegement of Slicer3. Compare and contrast all sets of results. Also, explore labeling capabilities of Slicer3.
Progress
Updated every day of Project Week.
