Difference between revisions of "UNC ARCTIC Tutorial"
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==Overview== | ==Overview== | ||
| − | Following | + | Following those tutorials, you will be able to perform an individual analysis of regional cortical thickness. |
In the ARCTIC tutorial, you will learn how to load input volumes, run the end-to-end module ARCTIC to generate cortical thickness information and display output volumes. | In the ARCTIC tutorial, you will learn how to load input volumes, run the end-to-end module ARCTIC to generate cortical thickness information and display output volumes. | ||
And in the UNC external modules, you will be able to run the UNC external modules within Slicer3 in order to perform a regional cortical thickness analysis step by step. | And in the UNC external modules, you will be able to run the UNC external modules within Slicer3 in order to perform a regional cortical thickness analysis step by step. | ||
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Roadmap project : http://www.na-mic.org/Wiki/index.php/DBP2:UNC:Regional_Cortical_Thickness_Pipeline | Roadmap project : http://www.na-mic.org/Wiki/index.php/DBP2:UNC:Regional_Cortical_Thickness_Pipeline | ||
| − | == | + | ==Tutorials== |
| − | • [ | + | • [[Media:ARCTIC-Slicer3-Tutorial.ppt|ARCTIC tutorial (end-to-end Slicer3 module)]] |
| + | |||
| + | • [[Media:UNC_Modules-Slicer3-Tutorial.ppt|UNC Modules tutorial (UNC modules to perform regional cortical thickness analysis)]] | ||
==Software== | ==Software== | ||
Revision as of 00:53, 7 January 2009
Home < UNC ARCTIC TutorialContents
ARCTIC (Automatic Regional Cortical ThICkness) Slicer3 Tutorial
Overview
Following those tutorials, you will be able to perform an individual analysis of regional cortical thickness. In the ARCTIC tutorial, you will learn how to load input volumes, run the end-to-end module ARCTIC to generate cortical thickness information and display output volumes. And in the UNC external modules, you will be able to run the UNC external modules within Slicer3 in order to perform a regional cortical thickness analysis step by step.
Roadmap project : http://www.na-mic.org/Wiki/index.php/DBP2:UNC:Regional_Cortical_Thickness_Pipeline
Tutorials
• ARCTIC tutorial (end-to-end Slicer3 module)
• UNC Modules tutorial (UNC modules to perform regional cortical thickness analysis)
Software
• Slicer3 http://www.slicer.org/pages/Downloads
• BatchMake http://www.batchmake.org/batchmake/resources/software.html
Tutorial materials
• BatchMake wrapper (ARCTIC_BatchMake_Wrapper_1.0)
• Tutorial dataset(ARCTIC_Tutorial_example_1.0)
• External modules (ARCTIC_Executables_1.0)
• Pediatric atlas (UNC_Pediatric_Brain_Atlas)
People
Cedric Mathieu
Clement Vachet
Martin Styner
Heather Cody Hazlett
