Difference between revisions of "Proposed work pipeline"
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# Andriy: use BRAINSfit to align all other sbjects to template through Affine + BSpline | # Andriy: use BRAINSfit to align all other sbjects to template through Affine + BSpline | ||
# Ginger: compute average of the aligned subjects and manual separate to GM, WM + CSF | # Ginger: compute average of the aligned subjects and manual separate to GM, WM + CSF | ||
| − | # Ron: manually segment sub-cortical structures. | + | # Ron: manually segment sub-cortical structures. |
| − | + | # Ginger: produce Slicer3 module for back propagation and manual correct the results | |
| − | # Ginger: produce Slicer3 module for back propagation and manual correct the results | ||
| − | |||
# Ginger: smooth back propagation results to generate final templates | # Ginger: smooth back propagation results to generate final templates | ||
| − | |||
# Andriy: register atlas to each subjects and apply resulting transformation to align atlas to each subjects | # Andriy: register atlas to each subjects and apply resulting transformation to align atlas to each subjects | ||
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# Ginger: finalize by EM segmentation. | # Ginger: finalize by EM segmentation. | ||
Meanwhile: Ginger will perform EM segmentation on Gucci to separate into WM, GM, CSF and Ron helps to segment sub-cortical structures. | Meanwhile: Ginger will perform EM segmentation on Gucci to separate into WM, GM, CSF and Ron helps to segment sub-cortical structures. | ||
Latest revision as of 14:30, 12 October 2009
Home < Proposed work pipeline- Ginger: produce ICC mask for chosen template: Gucci
- Andriy: use BRAINSfit to align all other sbjects to template through Affine + BSpline
- Ginger: compute average of the aligned subjects and manual separate to GM, WM + CSF
- Ron: manually segment sub-cortical structures.
- Ginger: produce Slicer3 module for back propagation and manual correct the results
- Ginger: smooth back propagation results to generate final templates
- Andriy: register atlas to each subjects and apply resulting transformation to align atlas to each subjects
- Ginger: finalize by EM segmentation.
Meanwhile: Ginger will perform EM segmentation on Gucci to separate into WM, GM, CSF and Ron helps to segment sub-cortical structures.
