Difference between revisions of "Slicer3:Alpha"

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== Logistics ==
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The Alpha1 version of Slicer3, to be in place by the end of March 2006, will have a first implementation of the following features. Refactoring/Improvement is expected to be ongoing, but this will be a preview for Cores 1 and 3 to see the direction we are going.
  
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* Slicer3: all day Tuesday, Dec 12
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= Functional Example =
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* Location: Kitware, Inc. 28 Corporate Drive, Clifton Park, NY 12065 (go to http://www.kitware.com/profile/contactus.html for location information). We will meet in the downstairs conference room. Enter the building from the main entrance and the primary entry to Kitware is on the immediate right.
 
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* Hotel: Comfort Suites (see http://www.kitware.com/profile/Map.pdf) at 7 Northside Drive, Clifton Park, NY 12065 phone 518-373-2255.
 
  
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If you are calling to make your own reservations at the hotel - please let me know this also - so I can be sure we do have enough rooms.
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* Spec to be discussed. Possible options:
 +
** Registration Interface
 +
** Population study batch job manager
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** Simple Image Viewer (possibly some Editor functions)
  
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Kitware, Inc. 28 Corporate Drive Clifton Park, NY 12065 USA 518-371-3971
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= Architecture =
  
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== Purpose ==
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(Steve will propose, for discussion by group)
  
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* This meeting is intended as a last coordination meeting before the January AHM. It is the official release date for the Alpha version of Slicer 3.
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* Naming conventions for files and classes
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* You should plan to attend if you are either actively writing code for Slicer3 or plan to do so over the holidays.
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* Directory Layout
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* Please see the [[Slicer3:Developers|'''Slicer 3''']] developers pages for more information about the current state of Slicer 3.
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* Functional breakdown between libraries, application, modules
  
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== Agenda ==
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Here's a rough [[Media:Slicer3-architecture-2006-01-26.ppt| slicer 3 architecture diagram]] to help explain some of the ideas.
  
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* This time will be set up as a 'programming day' with people working on individual projects needed to finish up outstanding issues in slicer3 and prioritize work before the AHM.
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= Build/Test/Deploy =
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** Slicer3 intrinsic projects
 
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** Core 1 collaboration projects
 
  
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=== Monday ===
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(Andy, Katie - ASAP)
  
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Optional meeting day.
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* svn repository set up to build 'skeleton' app
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** vtk5, kwwidgets, itk
 +
** CMake files
 +
** Nightly builds and tests
 +
** CPack'ed nightly installers
  
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* Some Boston people will be at Kitware for one-on-one meetings and projects.
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== Subversion Repository ==
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** packaging
 
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** look and feel tweaks
 
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** polishing GUI functionality
 
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** bug thumpin'
 
  
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* Oranizational tcon for west coast participants (time tbd)
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* svn co http://www.na-mic.org:8000/svn/Slicer3/trunk Slicer3
  
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=== Tuesday ===
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== Directory Structure ==
  
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* 9:00 Organizational tcon
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/Libs
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** Quick update on [[Slicer3:Developers#Slicer_3_Projects|each project]]
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      /VTK
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*** identify outstanding tasks for AHM
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      /ITK
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*** plan the day's work
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      /KWWidgets
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* 10-4 Work in project teams
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      /TclTk
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* 4:00 Review tcon
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      /MRML
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** summarize progress
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/Base
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** identify any remaining issues
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      /Logic
 +
      /GUI
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/Modules
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      /Module1
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          /Logic
 +
          /GUI
 +
      /Module2
 +
          /Logic
 +
          /GUI
 +
      ...
  
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== Attendees ==
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= Data Model =
  
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* Kitware
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(Alex, Xiaodong)
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** Will Schroeder
 
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** Andy Cedilnik
 
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** Sebastien Barre
 
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** Yumin Yuan
 
  
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* BWH
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* A buildable MRML library with API for core data nodes (Volumes, Models, Fiducials, Transforms...)
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** Steve Pieper
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* A prototype for a DTMRI MRML node
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** Ron Kikinis
 
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** Katie Hayes
 
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** Nicole Aucoin
 
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** Wendy Plesniak
 
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** Nobuhiko Hata
 
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** Haying Liu
 
  
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* GE
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= Coordinate System Manager =
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** Bill Lorensen
 
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** Jim Miller
 
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** Dan Blezek
 
  
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* Other
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(Mike, Luis)
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* UCSD
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** Neil Jones
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* API and buildable lib for Linear transforms applied to MRML nodes
 +
 
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= Execution Model =
 +
 
 +
(Dan, Jim)
 +
 
 +
* Spec and tools for self-describing command line arguments
 +
* Example GUI built from CL description
 +
 
 +
= Visualization/UI =
 +
 
 +
(Wendy, Sebastien)
 +
 
 +
* Skeleton Framework of Slicer3 desktop application
 +
** KWWidgets application shell with 3D View, slice windows, module area, main menu...
 +
 
 +
= slicer2.x modules =
 +
 
 +
(Nicole, Mathieu)
 +
 
 +
* An example of loading a slicer2.x module into the new build (so that vtk classes are callable)
 +
* UI, MRML interaction not expected to be working in the Alpha stage
 +
* Port key slicer2.x vtk classes to vtk5
 +
 
 +
= Pipeline Integration =
 +
 
 +
(Mike, Jags)
 +
 
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* Example of how to invoke a pipeline module using the Slicer3 Execution Model syntax
 +
 
 +
= Grid Integration =
 +
 
 +
(Brendan, Jeff)
 +
 
 +
* Example of how to start a condor job using the Slicer3 Execution Model syntax

Revision as of 14:03, 18 December 2006

Home < Slicer3:Alpha

The Alpha1 version of Slicer3, to be in place by the end of March 2006, will have a first implementation of the following features. Refactoring/Improvement is expected to be ongoing, but this will be a preview for Cores 1 and 3 to see the direction we are going.

Functional Example

  • Spec to be discussed. Possible options:
    • Registration Interface
    • Population study batch job manager
    • Simple Image Viewer (possibly some Editor functions)

Architecture

(Steve will propose, for discussion by group)

  • Naming conventions for files and classes
  • Directory Layout
  • Functional breakdown between libraries, application, modules

Here's a rough slicer 3 architecture diagram to help explain some of the ideas.

Build/Test/Deploy

(Andy, Katie - ASAP)

  • svn repository set up to build 'skeleton' app
    • vtk5, kwwidgets, itk
    • CMake files
    • Nightly builds and tests
    • CPack'ed nightly installers

Subversion Repository

Directory Structure

/Libs
     /VTK
     /ITK
     /KWWidgets
     /TclTk
     /MRML
/Base
     /Logic
     /GUI
/Modules
     /Module1
          /Logic
          /GUI
     /Module2
          /Logic
          /GUI
     ...

Data Model

(Alex, Xiaodong)

  • A buildable MRML library with API for core data nodes (Volumes, Models, Fiducials, Transforms...)
  • A prototype for a DTMRI MRML node

Coordinate System Manager

(Mike, Luis)

  • API and buildable lib for Linear transforms applied to MRML nodes

Execution Model

(Dan, Jim)

  • Spec and tools for self-describing command line arguments
  • Example GUI built from CL description

Visualization/UI

(Wendy, Sebastien)

  • Skeleton Framework of Slicer3 desktop application
    • KWWidgets application shell with 3D View, slice windows, module area, main menu...

slicer2.x modules

(Nicole, Mathieu)

  • An example of loading a slicer2.x module into the new build (so that vtk classes are callable)
  • UI, MRML interaction not expected to be working in the Alpha stage
  • Port key slicer2.x vtk classes to vtk5

Pipeline Integration

(Mike, Jags)

  • Example of how to invoke a pipeline module using the Slicer3 Execution Model syntax

Grid Integration

(Brendan, Jeff)

  • Example of how to start a condor job using the Slicer3 Execution Model syntax
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