Difference between revisions of "AHM2010:Non-interactive-tools"
From NAMIC Wiki
| Line 67: | Line 67: | ||
** Slicer modules executed on a grid when mouse MRI are uploaded to a MIDAS server | ** Slicer modules executed on a grid when mouse MRI are uploaded to a MIDAS server | ||
** DTI analysis, atlas-based segmentation, brain morphormetry | ** DTI analysis, atlas-based segmentation, brain morphormetry | ||
| + | |||
| + | = Renewal = | ||
| + | |||
| + | == Integrated project tracking == | ||
| + | * SVN, CMake, CPack, CTest, CDash, Wiki, and BugTracker will be extended to report to a central server | ||
| + | * Generates a comprehensive timeline of a project. | ||
| + | * Example use cases | ||
| + | ** Commit a code change and a report is sent to the server indicating | ||
| + | *** files changed, by whom, on what date, | ||
| + | *** changes to the dashboard that resulted from the commit, | ||
| + | *** wiki page changes made by that author around that date/time, | ||
| + | *** bug associated with that commit | ||
| + | |||
| + | == iPython for distributed computing == | ||
| + | * Python chosen as a favored scripting language for Slicer | ||
| + | ** VTK and Qt are well supported by python | ||
| + | ** ITK v4 will have python as a target language | ||
| + | ** Considered perl (biologists), tcl (comp sci), BatchMake, JavaScript, ... | ||
| + | * iPython contains extensions to python for threaded, grid, and distributed computing | ||
| + | ** Reduced setup and learning curve | ||
| + | ** Broad support | ||
Revision as of 18:14, 2 January 2010
Home < AHM2010:Non-interactive-toolsBack to AHM 2010
CMake / CPack
Summary
- Release candidate 2.9
- 1200 downloads per day
- Users: KDE, Blizzard, NVidia, ...
Features added
- Library support: Qt, R, ...
- Superbuild: single run to download and install multiple libraries and executables
Use cases
- 3DSlicer, Teem, CLI Modules, MRML, ...
Related funding
- ARL, ITK, LANL, Sandia, ...
CDash / CTest
Summary
- CDash rewritten
- Php, Mysql
- 100 projects freely hosted on cdash.org
- Over 300 submissions to ITK's dashboard on ITK's 10th birthday
Features added
- CDash
- New statistics generated
- Compression
- CTest
- Parallel test (ctest -j)
- Dependencies
Use cases
- Over 100 tests added to Slicer
- Increasing code coverage
- Nightly testing on linux, Mac, windows
Related funding
- ARL, ITK, Sandia, LANL, ...
Grid Wizard Engine
Summary
Features added
Use cases
Related funding
BatchMake
Summary
- Scripted description of a processing pipeline that can be applied to a large collection of images or to a large collection of parameter values.
Features added
Use cases
- UNC SBIR, see below
- Registration module testing
Related funding
- UNC, Phase 2 SBIR with Kitware: High throughput murine image analysis
- Slicer modules executed on a grid when mouse MRI are uploaded to a MIDAS server
- DTI analysis, atlas-based segmentation, brain morphormetry
Renewal
Integrated project tracking
- SVN, CMake, CPack, CTest, CDash, Wiki, and BugTracker will be extended to report to a central server
- Generates a comprehensive timeline of a project.
- Example use cases
- Commit a code change and a report is sent to the server indicating
- files changed, by whom, on what date,
- changes to the dashboard that resulted from the commit,
- wiki page changes made by that author around that date/time,
- bug associated with that commit
- Commit a code change and a report is sent to the server indicating
iPython for distributed computing
- Python chosen as a favored scripting language for Slicer
- VTK and Qt are well supported by python
- ITK v4 will have python as a target language
- Considered perl (biologists), tcl (comp sci), BatchMake, JavaScript, ...
- iPython contains extensions to python for threaded, grid, and distributed computing
- Reduced setup and learning curve
- Broad support
