Difference between revisions of "2010 Winter Project Week Tractography"
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==Key Investigators== | ==Key Investigators== | ||
Revision as of 16:39, 4 January 2010
Home < 2010 Winter Project Week Tractography
Key Investigators
- BWH: James Malcolm, Peter Savadjiev, Yogesh Rathi, C-F Westin
Objective
Integrate recent methods for filtered tractography into Slicer3 using Python.Plan
Implement various local models and filtering techniques. Support both region-of-interest and fiducial seeding. Support both interactive and batch processing. Picking fibers and moving them between polydata structures.Progress
We have MATLAB implementations of various local models (single-tensor, two-tensor, Watson functions, weighted mixtures of these, etc.) and various model-based filters (Kalman, unscented Kalman, particle, etc.). We have begun converting these to NumPy/Python as well as the additional infrastructure for performing tractography within Slicer.
- Malcolm, Michailovich, Bouix, Westin, Shenton, Rathi. "A filtered approach to neural tractography using the Watson directional function", MedIA 14(1), p.58-69, 2010.
- Malcolm, Shenton, Rathi. "Neural tractography using an unscented Kalman filter", IPMI, p.126-138, 2009.
- Savadjiev, Zucker, Siddiqi. "On the Differential Geometry of 3D Flow Patterns: Generalized Helicoids and Diffusion MRI Analysis", ICCV 2007
