Difference between revisions of "Smoothing multi-label brain segmentations"
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# input: a multi-label map to be smoothed. With structures: | # input: a multi-label map to be smoothed. With structures: | ||
− | + | * WM label 3 | |
− | + | * CSF label 1 | |
− | + | * GM(without the following specified sub-cortical structures) label 2, | |
− | + | * GM sub-cortical structures | |
− | + | ** RCaudate label 13 | |
+ | ** LCaudate label 14 | ||
+ | ** RPutamen label 15 | ||
+ | ** LPutamen label 16 | ||
+ | ** RCaudate label 17 | ||
+ | ** RCaudate label 18 | ||
+ | ** RCaudate label 11 | ||
+ | ** RCaudate label 12 | ||
+ | ** RCaudate label 19 | ||
+ | ** RCaudate label 20 | ||
+ | |||
# Segmentation using one of the approaches below | # Segmentation using one of the approaches below |
Revision as of 22:33, 27 January 2010
Home < Smoothing multi-label brain segmentationssmoothing workflow
- input: a multi-label map to be smoothed. With structures:
* WM label 3 * CSF label 1 * GM(without the following specified sub-cortical structures) label 2, * GM sub-cortical structures ** RCaudate label 13 ** LCaudate label 14 ** RPutamen label 15 ** LPutamen label 16 ** RCaudate label 17 ** RCaudate label 18 ** RCaudate label 11 ** RCaudate label 12 ** RCaudate label 19 ** RCaudate label 20
- Segmentation using one of the approaches below
- Up to Affine registration of the subject to bias-corrected, skull-stripped Baseline scan
- Map the Baseline ICC mask to the State 1 space
- Skull stripping State 1 scan
- Bias-correction of State 1 scan
- Repeat up to affine registration of skull-stripped, bias-corrected State 1 scan to Baseline