User:Noby

M==Course Title==

Introduction to Opensource Software Slicer and its Application to Image-Guided Therapy

Course Syllabus

The purpose of this tutorial is to provide the members of the research community with a practical experience of the image processing, 3D visualization, and Image-Guided Therapy capabilities of the Open Source 3D Slicer software platform. The curriculum is hands-on which means that participants are required to attend the workshop with a suitable laptop, preloaded with the software and sample data as specified below. Attendance is limited in order to ensure quality interactions between the faculty and participants.

講師

• 波多伸彦

Surgical Planning Laboratory, Brigham and Women's Hospital, Boston MA

• 徳田淳一

Surgical Planning Laboratory, Brigham and Women's Hospital, Boston MA

Logistics

• 日時：２０１０年３月１６日（火曜日）
• Time: 9am - 4pm
• Location: 東京女子医大
• 参加者は各自のノートブックパソコンにSlicerをダウンロードしてコンパイルできる方に限ります
• 参加希望者はhata@bwh.harvard.eduまで名前、所属、使用パソコンのOSをお送りください。

講義シラバス

Morning: Introduction to Slicer

• 9:00 am - 9:10 am インストール確認、サポート
• 9:10 am - 9:30 am Slicer3 Overview and Applications (Ron Kikinis)
• 9:30 am - 10:30 am Hands-on Session 1: Data Loading and 3D Visualization (波多伸彦)
• 10:30 am - 10:45 am Coffee-break
• 10:45 am - 11:30 am Hands-on Session 2: Data Saving (山田 篤史)
• 11:30 am - 12:00 pm Discussion and Conclusion
• 12:00 -1pm Lunch Break

Afternoon: Introduction to Slicer IGT

• 1:00 - 2:00 pm 特別講演Ron Kikinis
• 2:00 - 2:15 pm Introduction: Why Slicer3 for your IGT research? An overview of Slicer3 for IGT. (15 min. 鎮西清行)
• 2:30 - 3:30 pm Neurosurgical Planning and Guidance by Slicer
  • Module 1-3 (1:30-2:45 pm) (徳田淳一)

1. Loading and visualizing anatomical MRI data
2. Incorporating fMRI data using image registration and thresholding
3. Creating a 3D model of the tumour volume

• 3:45 - 5:00 pm Coffee-break
  • Module 4-6 (3:00-4:00 pm) (TBD)

1. Predicting the locations of brain structures using image registration and a brain atlas
2. Incorporating brain fiber tractography from diffusion weighted images
3. Annotating the preoperative plan and saving the scene

参加準備

Please complete the following items prior to the course. Support will be provided as requested

• Software Installation: Please install the newest Slicer3.4 release appropriate to the computer you will be bringing to the workshop:
  • Windows: Slicer3-3.4-2009-05-21-win32.exe
  • Mac OSX Darwin PPC: Slicer3-3.4.2009-05-21-darwin-ppc.tar.gz
  • Mac OSX Darwin Intel: Slicer3-3.4.2009-05-21-darwin-x86.tar.gz
  • Linux x86: Slicer3-3.4.2009-05-21-linux-x86.tar.gz
  • Linux x86-64: Slicer3-3.4.2009-05-21-linux-x86_64.tar.gz

The instructions for installing the Slicer3 program describe the different steps of the procedure on Mac OS, Linux and Windows.

Recommended configuration: Windows XP, Linux (x86 or x86_64), Mac OS (ppc or Intel), 2 GB of RAM and a dedicated graphic accelerator with 128 MB of on board graphic memory.

• Data to download: Please install the Slicer3VisualizationDataset.

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