User:Noby

M==Course Title==

Introduction to Opensource Software Slicer and its Application to Image-Guided Therapy

Course Syllabus

The purpose of this tutorial is to provide the members of the research community with a practical experience of the image processing, 3D visualization, and Image-Guided Therapy capabilities of the Open Source 3D Slicer software platform. The curriculum is hands-on which means that participants are required to attend the workshop with a suitable laptop, preloaded with the software and sample data as specified below. Attendance is limited in order to ensure quality interactions between the faculty and participants.

講師

• 波多伸彦

Surgical Planning Laboratory, Brigham and Women's Hospital, Boston MA

• 徳田淳一

Surgical Planning Laboratory, Brigham and Women's Hospital, Boston MA

Logistics

• 日時：２０１０年３月１６日（火曜日）
• Time: 9am - 4pm
• Location: 東京女子医大
• 参加者は各自のノートブックパソコンにSlicerをダウンロードしてコンパイルできる方に限ります。医師、研修医、医歯薬、理工学大学院生を対象としてカリキュラムは組まれています。
• 参加希望者はhata@bwh.harvard.eduまで名前、所属、使用パソコンのOSをお送りください。

講義シラバス

Morning: Introduction to Slicer

• 9:00 am - 9:10 am インストール確認、サポート
• 9:10 am - 9:30 am Slicer3 Overview and Applications (波多伸彦)
• 9:30 am - 10:30 am Hands-on Session 1: Data Loading and 3D Visualization （日本語版スライド準備中）(鈴木孝司)
• 10:30 am - 10:45 am Coffee-break
• 10:45 am - 11:30 am Neurosurgical Planning and Guidance by Slicer（日本語版スライド準備中）(山田 篤史、林 雄一郎)
  • Module 1-3 (1:30-2:45 pm)

1. Loading and visualizing anatomical MRI data
2. Incorporating fMRI data using image registration and thresholding
3. Creating a 3D model of the tumour volume

• 11:30 am - 12:00 pm Discussion and Conclusion
• 12:00 -1pm Lunch Break

Afternoon: Introduction to Slicer IGT

• 1:00 - 2:00 pm 特別講演Ron Kikinis （一般公開）
• 2:00 - 2:15 pm Introduction: Why Slicer3 for your IGT research? An overview of Slicer3 for IGT. (15 min. 鎮西清行)
• 2:30 - 3:30 pm
• Module 4-6 Neurosurgical Planning and Guidance by Slicer（日本語版スライド準備中）(洪在成)

1. Predicting the locations of brain structures using image registration and a brain atlas
2. Incorporating brain fiber tractography from diffusion weighted images
3. Annotating the preoperative plan and saving the scene

• 3:30 - 4:45 pm Coffee-break
  • Slicerを用いた研究モジュールの作り方(徳田淳一）
  • Slicerによる産学連携（Aze)

参加準備

Please complete the following items prior to the course. Support will be provided as requested

• Software Installation: Please install the newest Slicer3.4 release appropriate to the computer you will be bringing to the workshop:
  • Windows: Slicer3-3.4-2009-05-21-win32.exe
  • Mac OSX Darwin PPC: Slicer3-3.4.2009-05-21-darwin-ppc.tar.gz
  • Mac OSX Darwin Intel: Slicer3-3.4.2009-05-21-darwin-x86.tar.gz
  • Linux x86: Slicer3-3.4.2009-05-21-linux-x86.tar.gz
  • Linux x86-64: Slicer3-3.4.2009-05-21-linux-x86_64.tar.gz

The instructions for installing the Slicer3 program describe the different steps of the procedure on Mac OS, Linux and Windows.

Recommended configuration: Windows XP, Linux (x86 or x86_64), Mac OS (ppc or Intel), 2 GB of RAM and a dedicated graphic accelerator with 128 MB of on board graphic memory.

• Data to download: Please install the Slicer3VisualizationDataset.

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