AlgorithmRetreat2010

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Nov 5-6, Chapel Hill, NC

Introduction

• The NA-MIC algorithm core holds an annual retreat
• The 2010 event will begin on 8:30 am on Friday the 5th of Nov and finish at approximately 2pm on Saturday the 6th.
• Meeting location: SittersonHall/Brooks Building, chair's conference room, FB120 (first floor)

Agenda

Friday

• 8:30 meet in Chair's conference room, Brooks Building, coffee
• 9-10 DBP updates, data availability, each 15 minutes
• 10-10:30 DBP common themes, differences, what is missing
• 10:30-12 Overview of Core 1 site short and long term plans (each 15 min)
• noon lunch
• 1-2 Discussion on longitudinal & personalized registration topics
• 2-3 Discussion on longitudinal & personalized segmentation topics
• 3-4 Discussion on longitudinal & personalized shape topics
• 4-5 makeup slot

Saturday

• 8:30 meet & coffee, meeting first in front of Sitterson Hall (doors are closed on Saturday)
• 9-11 Slicer
  • Ron will give an update on Slicer 3.6.2 and Slicer 4, extensions
    • Extensions:

1. If your algorithm can be delivered as a CLI, then develop and deploy it now as an extension for 3.6 and the nightly builds. This will transition smoothly to slicer4.
2. If your algorithm requires interactivity then
   1. If you want to deploy it within the next 6 months, then consider a python or tcl scripted wizard interface to CLI code, knowing that there will be some porting required.
   2. if a wizard isn't interactive enough, consider a custom kwwidgets interface, knowing that this will be difficult to port to slicer4
3. if your deployment target is 6 or more months out, you should begin working with the slicer4 Qt developer build starting in January.

• • • Most of the DBP projects fall under rule 3. If a CLI plug-in is the end result, then 3.6 is still a good target for now.
  • Ron will give a demo of Changetracker, GrowCutSegment, Fastmarching.
  • Allen and Yi Gao will demo RSS

• • Discussion on interactive issues, what level of interaction, how to mesh those with Slicer
• 11-12 AHM planning
• noon lunch on Franklin street
• 1-2 summary, make up slot

Topics

• Plans, Needs, Expectations of and Interactions with DBPs (Core-1 contacts, all)
  • Actions items for the AHM
  • Plans for the next 12 months
• Segmentation
• Registration
  • Upcoming event: New Directions in Registration Workshop
• Other algorithm classes
  • Shape
  • Interactive algorithms
• Interaction with the Engineering Core
  • See whitepaper about the interactions between Cores 1a, 1b, and 2.

Suggested Hotels

Nice for walking to campus & Franklin Street, but rather expensive (ask for the University/Computer Science rate of 159 USD per night):

• Carolina Inn, 211 Pittsboro Street, Chapel Hill, NC
• Franklin Hotel, 311 W Franklin St, Chapel Hill, NC

Best suggestions (need taxi or rental car to campus & Franklin Street):

• Courtyard Marriott, 100 Marriott Way, Chapel Hill, NC
• Days Inn, 15-501 & Fordham Blvd, Chapel Hill, NC 27514 US

Attendees

• Ross Whitaker, Utah
• Guido Gerig, Utah
• Polina Golland, MIT
• Allen Tannenbaum, Georgia Tech
• Martin Styner, UNC
• Ipek Oguz, UNC
• Marc Niethammer, UNC
• Ron Kikinis (Saturday only)
• Michal Depa, MIT
• Archana Venkataraman, MIT
• Sam Gerber, Utah
• Marcel Prastawa, Utah
• Yi Gao, Georgia Tech
• Romeil Sandhu, Georgia Tech