Difference between revisions of "CTSC:ARRA.102610"

From NAMIC Wiki
Jump to: navigation, search
(Created page with 'Back to CTSC:ARRA supplement <br> UNDER CONSTRUCTION DO NOT READ YET this is a mess! '''Agenda''' * Update on Phase 2/3/4 mi2b2 software * XNAT at U of Iowa, what opportun…')
 
Line 35: Line 35:
 
=== mi2b2 software update ===
 
=== mi2b2 software update ===
  
−
* Phase 3 is being tested, but is limited now by number and size of test images.  Darren offered to assist in identifying a broad range of medical image types: modalities (e.g. MRI, PET, CT, ultrasound), study types (e.g. diffusion, angiogram), body parts (e.g. brain, heart, prostate), ages of patients (e.g. neonate, child, adult). He will meet with Chris and Bill to do this, with Vincent helping as needed.  Also, Vincent will help by identifying additional subjects from the approved IRBs to do patient driven queries.   
+
*  He will meet with Chris and Bill to do this, with Vincent helping as needed.  Also, Vincent will help by identifying additional subjects from the approved IRBs to do patient driven queries.   
  
 
* Increased RAM to 16 GB.   
 
* Increased RAM to 16 GB.   
  
−
* Thursday Darren, Vincent and Chris meeting to query
+
* On Thursday Darren, Vincent and Chris are meeting to query
  
 
* Kicked-off Phase 4 development work including integration with the newly designed GUI and XNAT integration.  
 
* Kicked-off Phase 4 development work including integration with the newly designed GUI and XNAT integration.  
Line 46: Line 46:
 
got quotes for Dell servers with 1TB storage for upgrading the MGH site. Chris is reviewing the quotes and will send his approval for which to use for this for the Phase 3 installation.  Plan is to buy two of them so we have the full dev/text and production environment.
 
got quotes for Dell servers with 1TB storage for upgrading the MGH site. Chris is reviewing the quotes and will send his approval for which to use for this for the Phase 3 installation.  Plan is to buy two of them so we have the full dev/text and production environment.
  
−
* Charles asked whether the virtual environment at CHB will be used?
 
  
 
* Jesse Wei reported that due to J
 
* Jesse Wei reported that due to J
Line 54: Line 53:
  
 
=== new mi2b2 grant ===
 
=== new mi2b2 grant ===
−
 
−
CTSC Informatics meeting (Kesselman was present for awhile as Informatics head of the CTSI) talked to Steve Pieper
 
−
 
−
Updated and in sync over mission of mi2b2.  Mike D'Arcy presented their Java tool that takes the DICOM header information and puts it into a table.  Similar to what XNAT does.  The BIRN supports a federated SQL thing that is interesting to i2b2.  BIRN can help by building a distributed query tool that builds on the i2b2 style pivot table.  Question for Dan or Tim, Can the REST API for XNAT pass in the structured SQL query language?
 

Revision as of 14:30, 2 November 2010

Home < CTSC:ARRA.102610

Back to CTSC:ARRA supplement
UNDER CONSTRUCTION DO NOT READ YET this is a mess!

Agenda

  • Update on Phase 2/3/4 mi2b2 software
  • XNAT at U of Iowa, what opportunities?
  • Preliminary discussion of new mi2b2 grant


Harvard Catalyst Medical Informatics group Meeting Minutes October 26, 2010

In attendance:

  • Bill Wang
  • Chris Herrick
  • Randy Gollub
  • Shawn Murphy
  • Steve Pieper
  • Ron Kikinis
  • Jon Bickel
  • Yong Gao (phone)
  • Paul Lamonica (phone)
  • Bill Hanlon (phone)
  • Mark Anderson (phone)
  • Alex Zeitsev (phone)
  • Dan Marcus (phone)
  • Ed Marcus CHB Cardiology (guest) built DICOM viewer code that might be useful for our team
  • Charles McGow
  • Jesse Wei (phone)


Meeting Minutes

mi2b2 software update

  • He will meet with Chris and Bill to do this, with Vincent helping as needed. Also, Vincent will help by identifying additional subjects from the approved IRBs to do patient driven queries.
  • Increased RAM to 16 GB.
  • On Thursday Darren, Vincent and Chris are meeting to query
  • Kicked-off Phase 4 development work including integration with the newly designed GUI and XNAT integration.
  • Need to ping

got quotes for Dell servers with 1TB storage for upgrading the MGH site. Chris is reviewing the quotes and will send his approval for which to use for this for the Phase 3 installation. Plan is to buy two of them so we have the full dev/text and production environment.


  • Jesse Wei reported that due to J

XNAT at U of Iowa, what opportunities?

Dan Marcus is on his way to visit U of Iowa to support both the NA-MIC funded Driving Biological Project on Huntington's Disease and to meet with representatives of their CTSC.

new mi2b2 grant

Retrieved from "https://www.na-mic.org/w/index.php?title=CTSC:ARRA.102610&oldid=60194"