RSNA2011 Planning

Quantitative Imaging Reading Room

Tentative list of demonstrations for the RSNA 2011 Slicer booth. Needs further development and testing Note: RSNA demo machines will need nvidia graphics cards to get GPU Volume Rendering

Nb	DEMO	Datasets	Notes	Tools	Slicer Modules
1	Data Loading and Visualization	Slicer3Visualization Data	Slicer3Visualization Tutorial	Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking (?)	Data, Volumes, Models, Scene Views
2	MRI-based topographic parcellation of human brain	EM Segmenter Data	registration, segmentation EMSegmenter Tasks	EM Segmenter	EMSegmenter
3	Volume Rendering #1 Head	Head CT Scan (Osirix Manix Dataset)	show cropping, transfer functions, GPU, slice composite view, Annotations	Volume Rendering and Annotations	Volume Rendering, Annotations, Scene Views
4	Volume Rendering #2 Abdomen	Abdominal CT scan with AAA (Osirix Panoramix Dataset)	show cropping, transfer functions, GPU, slice composite view, Annotations	Volume Rendering and Annotations	Volume Rendering, Annotations, Scene Views
5	Volume Rendering #3 Thorax	Thoracic CT scan	show cropping, transfer functions, GPU, slice composite view, Annotations	Volume Rendering and Annotations	Volume Rendering, Annotations, Scene Views
6	Traumatic Brain Injury Case Analysis	TBI Demo Data (UCLA)	TBI tutorial	ABC Segmentation, Model Maker, Editor, Annotations	Data, ABC Segmentation, Model Maker, Editor, Annotations, Scene Views
7	Radiotherapy	Plastimatch Dose Warping Data (MGH)	Plastimatch Tutorial	Plastimatch, DVH extension (Csaba)	Data, Plastimatch Extension: DICOM/DICOM-RT Import, DICOM/DICOM-RT Export, B-Spine Deformable Registration,XFORMWARP Warping with transform Transforms,
8	White matter exploration for neurosurgical planning	White Matter Exploration dataset	Neurosurgical planning Tutorial	Diffusion ( Estimation, Tractography, Fiducial Seeding), Editor, Model Maker	Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display
9	Longitudinal analysis of meningioma growth	Change Tracker Data are part of the tutorial	Change Tracker Tutorial	Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit	Change Tracker, Volume Rendering, BRAINSFit, CropVolume
10	Image-guided prostate interventions	Prostate Data updated for Slicer4, in progress Can load RSNA2010 demo scene, mostly working, see [1]	Pre-op/Intra-op registration; Use Case Demo Prostate Data	Linked Viewing	Annotations, Models, Crosshairs, CompareViews
11	Brain Atlas	NAC Multi-modality MRI-based Atlas of the Brain	Work in progress - atlases are being updated	Linked Viewing	Data, Volumes, Models, Scene Views
12	Abdomen Atlas	Knee Atlas	Work in progress - atlases are being updated	Linked Viewing	Data, Volumes, Models, Scene Views
13	Knee Atlas Atlas	Abdominal Atlas	Work in progress - atlases are being updated	Linked Viewing	Data, Volumes, Models, Scene Views

Some of the issues found with the demos

• EMS: use without atlas only
• Manix VR: minor issues with VR [2]
• Prostate dataset demo: not ready yet
• Radiotherapy: where are Plastimatch tools ? They used to be extensions in Slicer3, I don't think they are available in Slicer4

List of Slicer Modules involved in RSNA tutorials & demos

• Data
• Welcome to Slicer
• Volumes
• Models
• Scene Views
• Annotations
• Volume Rendering
• Editor
• Model Maker
• Diffusion Tensor Estimation
• Diffusion Tensor Scalar Measurements
• Tractography Labelmap Seeding
• Tractography Fiducial Seeding
• Tractography Display
• BRAINSTools
• Change Tracker
• CropVolume
• Extensions:
  • ABC
  • Plastimatch
  • EMSegmenter
  • Skull Stripper

Slicer4 Punchlist

• Unresolved
  • em segmenter: task simple brain segmentation works, but slowly.
  • ctkDICOMwidget
  • skull stripper
  • DWI to full brain tractography still does not work on mac
  • Data module does not refresh after drag and drop. [3]
• Volume rendering: We have a plan
• Resolved
  • brainsfit
  • changetracker
  • Center 3D view does not work properly [4]
  • Render performance [5]: This is a big issue

• Documentation: We need all core modules reasonably well documented.
• Download pages: We do not have a lot of time left.
• See the plan in July 2011

Additional Material

(under development)

• File:RSNA2010QIRRPoster.ppt poster 2010 (ppt)
• File:RSNA2010QIRRPoster.pdf poster 2010 (pdf)
• File:RSNA2011QIRR-LoopSlides.ppt Looping slide IN PROGRESS (ppt)
• File:RSNA2011QIRR-LoopSlides.pdf Looping slide (pdf)
• File:RSNA2011QIRRHandout.pptx handouts FINAL (pptx)
• File:RSNA2011QIRRHandout.pdf handouts FINAL (pdf)
• File:RSNA2011 16x9 slides template.ppt 16x9 wide-screen slides template (courtesy Mike Halle) (ppt)

People

• Ron Kikinis (Sunday through Tuesday)
• Sonia Pujol (Saturday through Friday)
• Samira Farough (Saturday-Friday)
• Andriy Fedorov (Saturday-Friday)
• Steve Pieper (Sunday through Wednesday?)
• Randy Gollub (Sunday-Monday)
• Valerie Humblet (Sunday-Tuesday)
• Kitware ( Julien Finet)

Slicer4RSNA Windows

RSNA2011 material

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