Tests of Iowa Workshop tutorials

Iowa 2012 Workshop Materials

Tutorial Name	Tutorial Data	Platform	Slicer Version	Test Date	Test Author & Comments/Mantis Links
Slicer4.1 DTI Tutorial	Diffusion Data	Mac OS Lion
Slicer4.1 DTI Tutorial	Diffusion Data	Mac OS Snow Leopard	2012/03/18	2012-03-18 (r19639)	Sonia. OK.
Slicer4.1 DTI Tutorial	Diffusion Data	Windows 7 32
Slicer4.1 DTI Tutorial	Diffusion Data	Windows XP	2012-03-17	3/18.12	Steve Everything works except turning on glyphs after label map seeding, which results in a crash due to lack of memory. Suggestion is to skip this step of the tutorial for users on win32. Another option is to only segment a single slice of the corpus in order to generate fewer tracts. Also it might help to delete the dwi volume after tensor estimation. When I did these steps I was able to complete all steps of the tutorial.
Slicer4.1 DTI Tutorial	Diffusion Data	Linux Unbuntu 64
Slicer4.1 DTI Tutorial	Diffusion Data	Linux 64 (debug)
Slicer4 DTI Tutorial	Diffusion Data	Linux 64 (debug)	r19517	03/07/2012	Nicole: 1793. 1795
Slicer4 DTI Tutorial	Diffusion Data	Windows 7 64b (package)	r19577	03/13/2012	Julien pdf is 95MB !?!? Page 22, Popup look is now different Page 23, in red slice only the popup should still be up (didn't unpin) Page 25: Diffusion Tensor Estimation has been renamed into DWI to DTI estimation Page 25: dwi is already selected as Input DWI Page 25: Minor Bug ! It stays "scheduled" for >5secs, not sure why Page 26: Popup looks different now Page 30: shouldn't labda1~labda2 >> lambda3 look more like a smarties ? Page 32: typo connect ->connects Page 36: Need to click on ">>" button first Page 41: Bug ! After apply, the foreground image is reset to none, need to manually set it back to dti Page 46: After selecting FractionalAnisotropy, Auto WL is automatically selected Page 48: You might want to include screenshot of Link button again Page 51: No need to move the mouse in 3D view, it automatically refreshes. If not, then a bug must be reported Page 57: 1 bullet point has no . at the end(for information, there is no . in the other slides. Page 60: Advice to use the right/left arrow keys to slice through? Page 65: No axial slice displayed in 3D Page 74: explain how to rename? Page 78: explain to go to Annotation module again ? Page 79: no need to turn off and on, it automatically refreshed when I placed the fiducial. If not, then a bug must be reported. Page 81: explain where to place fiducial. Page 82: Bug, it doesn't recompute automatically
Slicer4 DTI Tutorial	Diffusion Data	Windows XP 32b	Slicer 4.1.0 rc1 (r19609)	03/15/2012	Julien no link for the data mentioned in the tutorial No mention to what Slicer version the tutorial is compatible with Page1: Slicer Logo is 4.0, does it mean it's compatible with 4.0 ? no Page 10: I have 100modules (from log messages dialog CTRL+0) Page 19: typo: appears in the 2D viewers Page 22: Add "fit image to window" icon Page 41: Odd black pixels in fa volume (see email) Page 58: Add arrow to indicates how to change to yellow layout ? Page 60: icon of the draw tool ? I first used the paint tool instead Page 64: no "Minimum Length", only "Minimum Path Length". Bug ? why "Maximum Length" is not also "Maximum Path Length" ? Page 64: Bug: why only Integration Step Length is (mm) but not others? Page 66: Click on "Glyph" -> Crash (Slicer= 690Mo)
HelloPython Tutorial	HelloPythonDataset	Mac OS Lion	version from tutorial page	March 19	Steve Tested solution modules with sample data and all looked good.
HelloPython Tutorial	HelloPythonDataset	Windows 7 64	version from tutorial page	March 19	Steve Tested solution modules with sample data and all looked good.
HelloPython Tutorial	HelloPythonDataset	Windows XP 32	version from tutorial page	March 19	Steve Tested solution modules with sample data and all looked good.
HelloPython Tutorial	HelloPythonDataset	Linux Ubuntu 64	Slicer4.1rc1	03/19/2012	Benjamin p3 : Image has no link with this tutorial p16 : The Directory HelloPython has two sub directories "code" and "data". Wrong path. p21 : Add comment to warn the user about the indentation p17 : Slicer layout change compare to the previous screenshot p31 : We are not able to copy properly the text p35 : helloPython sript path is ".../helloPython/code/" p36: word "can" is written twice, and I already have 3 items in the sub menu "Exemples" p48: The Directory HelloPython has two sub directories "code" and "data". Wrong path. p50: Slicer layout change compare to the previous screenshot p55: The last line should be on 1 line, or warn the user who may not know how work Python. p59: Same as p48 and p16 p61: Slicer layout change compare to the previous screenshot p62: More explanation maybe - Up/Down - Left/Right - ?
HelloPython Tutorial	HelloPythonDataset	linux 64 (debug)
Neurosurgical Planning Tutorial	Neurosurgical Planning dataset	Mac OS SnowLeopard	2012.03.18	2012.03.18	Sonia. OK
Neurosurgical Planning Tutorial	Neurosurgical Planning dataset	Mac OS Lion
Neurosurgical Planning Tutorial	Neurosurgical Planning dataset	Windows 7 64	4.1.0-rc1-2012-03-17 r19637	March 19	Julien Page 13: Background is already correctly set Page 14: circle on screenshot where to change current volume to "BaselineVolume" (DTIVolume selected by default) (+ typo, it's "BaselineVolume" not "Baseline Volume") Page 24: You might want to mention that Grow Cut works in 3D Page 31: grow cut button circle is off Page 39: I don't have the axial slice visible in 3D view Page 40: Didn't understand why positioning the mouse in the cystic part Page 46: Give description for "Output Fiber Bundle"
Neurosurgical Planning Tutorial	Neurosurgical Planning dataset	Windows XP 32	version from tutorial page	March 19	Steve Worked as expected
Neurosurgical Planning Tutorial	Neurosurgical Planning dataset	Linux Ubuntu 64	4.1rc1	March 15	Steve - worked great - few content comments sent to Sonia
Neurosurgical Planning Tutorial	Neurosurgical Planning dataset	Linux 64 (debug)
Data Loading and 3DVisualization	3D Visualization dataset	Mac OS SnowLeopard	2012-03-18	2012-03-18 (r19639)	Sonia. OK. Note: The Save Scene doesn't save the scene with the correction orientation e.g. if the user saves the scene with 3D viewer showing the 3D models in Superior orientation, the scene gets restore in Anterior orientation.
Data Loading and 3DVisualization	3D Visualization dataset	Mac OS Lion
Data Loading and 3DVisualization	3D Visualization dataset	Windows 7 64			Julien Page 47: Opacity could have been set from the tree view directly (last column) Page 55 is a double Page 56: no mention to check the Slice Intersection checkbox Page 67 is a doublon
Data Loading and 3DVisualization	3D Visualization dataset	Windows XP 32	2012-03-17	3/18/12	Steve Everything worked as expected (32 bit windows build)
Data Loading and 3DVisualization	3D Visualization dataset	Linux Ubuntu 64
Data Loading and 3DVisualization	3D Visualization dataset	Linux 64 (debug)

• Back to Slicer4.1 Feb 27 page