Difference between revisions of "2012 Summer Project Week:NiftyReg"
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| + | reg_aladin is the global registration tool from NiftyReg. It is based on a block-matching approach to establish correspondences and a trimmed least square optimisation to determine the robust global transformation. | ||
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Revision as of 17:05, 21 June 2012
Home < 2012 Summer Project Week:NiftyReg
NiftyReg
What is Niftyreg?
- Light-weight package for medical image registration.
- Global (rigid/affine) registration based on a block-matching technique.
- Local deformation (non-rigid) based on a cubic B-Spline parametrisation.
- Implementation: C/C++ [SIMD, OpenMP, CUDA]
- All dependencies are included into the project (nifticlib, zlib, [NRRD, png]).
- Installation through CMake and step-by-step install can be found here
- Trunk can be downloaded through svn: svn co https://niftyreg.svn.sourceforge.net/svnroot/niftyreg/trunk/nifty_reg niftyreg
Key Investigators
- University College London: Marc Modat
- BWH: Sonia Pujol
Objective
NiftyReg is an open-source package for rigid, affine and non-linear registration developed the team of Dr. Sebastien Ourselin at the Centre for Medical Imaging Computing, University College London, UK. The objectives is to make NiftyReg available in Slicer.
Approach, Plan
Our approach is to develop a CLI module for NiftyReg in Slicer4.
Progress
The NRRD file format have been integrated into the NiftyReg package to ease its integration.
TCLAP has been incorporated into the NiftyReg project in order to enable the creation of a Slicer extension.
The XML file for one of the executable of NiftyReg: reg_aladin has been created and the slicer module created. reg_aladin is the global registration tool from NiftyReg. It is based on a block-matching approach to establish correspondences and a trimmed least square optimisation to determine the robust global transformation.
Delivery Mechanism
This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)
- ITK Module
- Slicer Module -
- Built-in -
- Extension -- commandline YES
- Extension -- loadable
- Other (Please specify)
References
- Modat et al. Fast free-form deformation using graphics processing units. Comput Meth Prog Bio (2010) vol. 98 (3) pp. 278-84
- Daga et al. Accurate Localisation of Optic Radiation during Neurosurgery in an Interventional MRI Suite. IEEE Transactions on Medical Imaging (2012)
- Modat. Parametric non-rigid registration using a stationary velocity field. Mathematical Methods in Biomedical Image Analysis (MMBIA), 2012 IEEE Workshop on (2012) pp. 145 - 150
